Sudaraka88 / LDWeaverLinks
Genomewide Epistasis Analysis on Bacteria
☆14Updated last month
Alternatives and similar repositories for LDWeaver
Users that are interested in LDWeaver are comparing it to the libraries listed below
Sorting:
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- Bacterial GWAS analysis☆40Updated last month
- Microbial agile accurate SNP Typer☆29Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Plasmid analysis using rearrangement distances☆42Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆24Updated 4 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 2 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Resolving Species Level Classification Using Emu☆13Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 3 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆15Updated 3 weeks ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆36Updated 3 months ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆17Updated 3 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- scripts for microbiome analysis☆11Updated 11 months ago
- Assembly based core SNP alignments☆7Updated 2 years ago