Multiomics-Analytics-Group / vuegenLinks
VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.
☆19Updated this week
Alternatives and similar repositories for vuegen
Users that are interested in vuegen are comparing it to the libraries listed below
Sorting:
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆23Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 5 months ago
- From metagenomes to epitopes and beyond☆12Updated 3 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated 3 weeks ago
- antimicrobial peptide prediction in R☆31Updated 6 months ago
- R tool to analyse and integrate multiple -omics data☆12Updated 3 weeks ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- metabolic heatmap☆20Updated 6 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- gutSMASH☆53Updated 6 months ago
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Updated 2 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- Software for predicting translation initiation rates in bacteria☆26Updated 7 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆12Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- ☆19Updated 3 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 weeks ago
- Open source short linear motif discovery and sequence analysis☆24Updated 9 months ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆19Updated 3 months ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆67Updated this week
- ☆30Updated 5 months ago
- ☆12Updated 4 years ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆14Updated 5 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆54Updated 2 months ago
- Parse GFF3 into Pandas dataframes☆27Updated last year
- ☆13Updated 8 months ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 7 years ago