Multiomics-Analytics-Group / vuegen
VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.
☆15Updated this week
Alternatives and similar repositories for vuegen:
Users that are interested in vuegen are comparing it to the libraries listed below
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 3 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last week
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆21Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 weeks ago
- R tool to analyse and integrate multiple -omics data☆10Updated 3 weeks ago
- Pipeline for major biological analyses.☆34Updated 3 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- From metagenomes to epitopes and beyond☆12Updated 2 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 8 months ago
- gutSMASH☆53Updated 4 months ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆14Updated 3 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆33Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆35Updated 7 months ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- ☆12Updated 4 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆48Updated 3 weeks ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 8 months ago
- ☆69Updated last month
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- metabolic heatmap☆20Updated 5 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆78Updated 5 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated 3 months ago
- ☆46Updated 6 months ago
- antimicrobial peptide prediction in R☆29Updated 4 months ago
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 3 weeks ago
- A simple command-line tool to download data from Joint Genome Institute databases☆51Updated 2 years ago
- ☆27Updated 3 months ago