Multiomics-Analytics-Group / vuegenLinks
VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.
☆28Updated 3 weeks ago
Alternatives and similar repositories for vuegen
Users that are interested in vuegen are comparing it to the libraries listed below
Sorting:
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- From metagenomes to epitopes and beyond☆12Updated this week
- ☆74Updated last year
- Various bioinformatics tutorials☆61Updated 2 years ago
- Python introduction for life scientists☆46Updated 5 months ago
- MicrobeRX☆11Updated 2 months ago
- ☆37Updated 2 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 9 months ago
- Example genomics data for tool developers☆116Updated last year
- Making bioinformatics fun again☆74Updated 4 months ago
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated last month
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Updated 2 years ago
- ☆10Updated 3 years ago
- GraphBio: a shiny web app to easily perform popular visualization analysis for omics data☆33Updated 2 years ago
- R tool to analyse and integrate multiple -omics data☆14Updated 4 months ago
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated this week
- visual analysis of your VCF files☆36Updated 2 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 4 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- ☆18Updated this week
- ☆31Updated 4 years ago
- ☆27Updated last year
- Fast and flexible ORF finder☆76Updated 3 years ago
- gutSMASH☆55Updated 2 weeks ago
- Examples for gget (https://github.com/pachterlab/gget).☆38Updated last month
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆35Updated 6 months ago