Multiomics-Analytics-Group / vuegenLinks
VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications. Users simply provide a directory with output files and VueGen compiles them into a structured report.
☆36Updated last month
Alternatives and similar repositories for vuegen
Users that are interested in vuegen are comparing it to the libraries listed below
Sorting:
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆42Updated last week
- A collection of useful functions for bioinformatics data analysis☆24Updated 2 weeks ago
- sangerseq_viewer is a python package to automatically visualize Sanger sequencing results and the corresponding annotated sequence map.☆39Updated last year
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated 11 months ago
- R tool to analyse and integrate multiple -omics data☆15Updated 6 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Interactive tutorials for using scikit-bio in biological research☆55Updated 4 months ago
- ☆33Updated 5 years ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆31Updated 2 weeks ago
- Comprehensive Python client for the Uniprot REST API☆54Updated 2 months ago
- EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence☆33Updated 2 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- Deep learning embedding for nucleotide sequences☆19Updated 9 months ago
- GraphBio: a shiny web app to easily perform popular visualization analysis for omics data☆33Updated 2 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆49Updated this week
- ☆10Updated 4 years ago
- Making bioinformatics fun again☆74Updated 3 weeks ago
- From metagenomes to epitopes and beyond☆12Updated 2 weeks ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Updated 6 months ago
- ☆36Updated 10 months ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆20Updated 11 months ago
- Workflow management with Nextflow and nf-core☆27Updated 11 months ago
- Examples for gget (https://github.com/pachterlab/gget).☆39Updated 3 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- Example genomics data for tool developers☆117Updated last year
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆63Updated 5 years ago
- Student course material for the Applied Bioinformatics course at Scripps Research☆39Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆29Updated 4 months ago