A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.
☆27Mar 22, 2026Updated 3 months ago
Alternatives and similar repositories for MSAexplorer
Users that are interested in MSAexplorer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 10 months ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 5 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- Grow your own Christmas tree within R using tree architectural models☆13Dec 17, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Updated this week
- Analysis of (gut) microbiome in Qiime2 and R.☆25Aug 23, 2024Updated last year
- A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, Lo…☆20Jul 11, 2024Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆37Jun 1, 2026Updated last month
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Jun 4, 2026Updated last month
- A companion for the Cromwell Server☆21Jun 16, 2026Updated 2 weeks ago
- Curso de introducción a la bioinformática e investigación reproducible☆36Jan 2, 2026Updated 6 months ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Docker image build for nextstrain/base☆12Jun 24, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 5, 2026Updated 3 weeks ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- ☆11Apr 3, 2023Updated 3 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Jun 16, 2026Updated 2 weeks ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Apr 27, 2026Updated 2 months ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- blastn2dotplots: multiple dot-plot visualizer☆25Sep 15, 2025Updated 9 months ago
- Nextstrain build for novel coronavirus SARS-CoV-2☆11Jan 11, 2021Updated 5 years ago
- VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact…☆15Jun 18, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis☆14Dec 4, 2023Updated 2 years ago
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆18May 23, 2026Updated last month
- VCF (variant call format) parser☆26Jun 26, 2026Updated last week
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 11 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆36Jul 21, 2025Updated 11 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆20Jun 18, 2026Updated 2 weeks ago
- Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.☆20Jun 23, 2026Updated last week
- WhatsGNU: a tool for identifying proteomic novelty☆16Jan 27, 2025Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jun 13, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Personal blog website, will not update anymore. https://shixiangwang.github.io is new site☆10Aug 13, 2019Updated 6 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 10 months ago
- download isfinder database☆13Nov 9, 2018Updated 7 years ago
- KDS software for Kinase Drug Selectivity☆10Jun 22, 2026Updated last week
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18May 19, 2026Updated last month
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆109May 23, 2025Updated last year
- ☆16Mar 4, 2025Updated last year