A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.
☆28Mar 22, 2026Updated 6 months ago
Alternatives and similar repositories for MSAexplorer
Users that are interested in MSAexplorer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Dec 26, 2025Updated 9 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆15Oct 1, 2026Updated last week
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- R package for phylodynamics☆16Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆25Updated this week
- Just another minhash implementation.☆13Sep 14, 2026Updated last month
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆29Jun 14, 2026Updated 4 months ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆18Mar 18, 2025Updated last year
- Identify which human reference genome was used to align a BAM/SAM/CRAM file☆34Jul 19, 2026Updated 2 months ago
- Terminal viewer for pdb files☆22Jan 5, 2026Updated 9 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆63Sep 10, 2026Updated last month
- Plugin that provides pairing functions to the Polars library☆14Feb 14, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Sep 23, 2026Updated 3 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆111Sep 12, 2026Updated last month
- 🎆 ✨ Wrapper around fireworks-js to bring fireworks to your Shiny application☆10Mar 8, 2026Updated 7 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆25Aug 19, 2026Updated last month
- Leviathan: Fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscripto…☆28Oct 6, 2026Updated last week
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆17Jan 29, 2024Updated 2 years ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- ☆12Feb 15, 2023Updated 3 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 8 years ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 3 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆19Apr 4, 2023Updated 3 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 11 years ago
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…☆16Jul 4, 2024Updated 2 years ago
- A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, Lo…☆20Jul 11, 2024Updated 2 years ago
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆20Apr 15, 2026Updated 5 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆41Sep 20, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python type stubs for the sortedcontainers package.☆22Apr 23, 2025Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- ☆139Aug 29, 2024Updated 2 years ago
- Grow your own Christmas tree within R using tree architectural models☆13Dec 17, 2019Updated 6 years ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Oct 5, 2026Updated last week
- ☆13Sep 13, 2026Updated last month
- Fasten toolkit, for streaming operations on fastq files☆85Updated this week