A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.
☆27Mar 22, 2026Updated this week
Alternatives and similar repositories for MSAexplorer
Users that are interested in MSAexplorer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 7 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆26Jan 30, 2026Updated last month
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Grow your own Christmas tree within R using tree architectural models☆13Dec 17, 2019Updated 6 years ago
- ☆13Nov 26, 2025Updated 3 months ago
- Analysis of (gut) microbiome in Qiime2 and R.☆23Aug 23, 2024Updated last year
- A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, Lo…☆20Jul 11, 2024Updated last year
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 3 weeks ago
- A companion for the Cromwell Server☆20Mar 1, 2026Updated 3 weeks ago
- Curso de introducción a la bioinformática e investigación reproducible☆33Jan 2, 2026Updated 2 months ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago
- Docker image build for nextstrain/base☆12Updated this week
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Nov 20, 2025Updated 4 months ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Updated this week
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- blastn2dotplots: multiple dot-plot visualizer☆24Sep 15, 2025Updated 6 months ago
- Nextstrain build for novel coronavirus SARS-CoV-2☆11Jan 11, 2021Updated 5 years ago
- VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact…☆15Nov 11, 2025Updated 4 months ago
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆17Mar 13, 2026Updated last week
- Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis☆14Dec 4, 2023Updated 2 years ago
- Variant Call Format (VCF) parser☆26Feb 28, 2026Updated 3 weeks ago
- Analysing the genomic context of mobile genes☆11Jul 21, 2025Updated 8 months ago
- WhatsGNU: a tool for identifying proteomic novelty☆15Jan 27, 2025Updated last year
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆35Jul 21, 2025Updated 8 months ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆17Mar 17, 2026Updated last week
- Inferring global and local strict molecular clocks using root-to-tip regression☆15Nov 17, 2025Updated 4 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- Personal blog website, will not update anymore. https://shixiangwang.github.io is new site☆10Aug 13, 2019Updated 6 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 7 months ago
- download isfinder database☆13Nov 9, 2018Updated 7 years ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆106May 23, 2025Updated 10 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- ☆16Mar 4, 2025Updated last year