☆15Aug 11, 2025Updated 6 months ago
Alternatives and similar repositories for PUREE
Users that are interested in PUREE are comparing it to the libraries listed below
Sorting:
- ☆22Feb 5, 2025Updated last year
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Oct 7, 2024Updated last year
- ☆11Sep 7, 2023Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- ☆18May 8, 2023Updated 2 years ago
- single-cell Contamination Detection and Correction☆17Jan 15, 2025Updated last year
- ☆13Jan 8, 2026Updated last month
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- ☆17Sep 16, 2024Updated last year
- ☆21Apr 16, 2024Updated last year
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Nov 6, 2025Updated 3 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 6 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆41Nov 28, 2023Updated 2 years ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 3 months ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 9 years ago
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆23Dec 7, 2024Updated last year
- Single-cell Mutual Information-based Network Engineering Ranger☆22Aug 28, 2025Updated 6 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆78Jan 13, 2026Updated last month
- A package for reference mapping and nice visualization☆24Dec 16, 2025Updated 2 months ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆30Jun 19, 2024Updated last year
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆33Dec 15, 2025Updated 2 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated last year
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Jul 30, 2022Updated 3 years ago
- ☆19Feb 20, 2018Updated 8 years ago
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆24Jun 28, 2024Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- ☆22Mar 6, 2023Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆65Feb 13, 2026Updated 2 weeks ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆71Updated this week
- Easily Process a Batch of Cox Models☆23Jul 26, 2025Updated 7 months ago
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- A single-cell RNA-seq pipeline☆26Apr 12, 2023Updated 2 years ago
- Muon for Julia☆28Feb 9, 2026Updated 3 weeks ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated last month
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated last month
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago