jurgjn / af-protein-universeLinks
Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins presented in (Barrio-Hernandez et al. 2023)
☆27Updated 2 years ago
Alternatives and similar repositories for af-protein-universe
Users that are interested in af-protein-universe are comparing it to the libraries listed below
Sorting:
- ☆23Updated 2 years ago
- ☆23Updated last month
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆16Updated last year
- ☆48Updated 3 weeks ago
- ☆32Updated 3 months ago
- a collection of colabs useful for molecular biology☆31Updated last year
- ☆16Updated last year
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 3 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Updated last year
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- Long disorder consensus predictor☆17Updated 3 months ago
- ☆13Updated last year
- Protein common interface databases☆10Updated 6 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆38Updated 4 months ago
- ☆30Updated 7 months ago
- Fast and accurate protein structure prediction☆56Updated 11 months ago
- Protein Structure Archiver☆13Updated 3 months ago
- Python package to manage protein structures and their annotations☆45Updated last year
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- ☆46Updated last year
- Fragment binding prediction with ColabFold☆41Updated last month
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 3 months ago
- ☆25Updated last year
- Frankies Scalable, AI-Based Antibody Design Pipeline☆18Updated 3 months ago
- ☆11Updated 4 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆35Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆60Updated last year
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Updated 11 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆32Updated 2 years ago