Alternatives and similar repositories for PLM-interact

Users that are interested in PLM-interact are comparing it to the libraries listed below

• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆41Updated last month
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆28Updated last year
• MarkusWenzel / xai-proteins
  Insights into the inner workings of transformer models for protein function prediction
  ☆15Updated last year
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆25Updated last year
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• maslov-group / DR-BERT
  ☆24Updated 2 years ago
• ronboger / conformal-protein-retrieval
  ☆16Updated 2 months ago
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆24Updated last year
• UCLOrengoGroup / cath-alphaflow
  ☆21Updated last month
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆29Updated 3 months ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• Doudna-lab / GARNET_DL
  ☆37Updated 5 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• microsoft / peft_proteomics
  LoRA for protein language models
  ☆38Updated last year
• haiyuan-yu-lab / PIONEER
  ☆26Updated 6 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• lehner-lab / domainome
  ☆14Updated 6 months ago
• morcoslab / LGL-VAE
  ☆14Updated 2 weeks ago
• whatdoidohaha / RFA
  Reference-free analysis of genetic architecture
  ☆17Updated 9 months ago
• JudeWells / chainsaw
  ☆40Updated 9 months ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆49Updated 7 months ago
• JSchlensok / VespaG
  Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction
  ☆15Updated 3 weeks ago
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆21Updated 3 weeks ago
• jertubiana / ProteinMotifRBM
  Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
  ☆20Updated 6 years ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆15Updated 3 months ago
• Llannelongue / B4PPI
  Benchmarking Pipeline for Prediction of Protein-Protein Interactions
  ☆12Updated 3 years ago
• PDB-REDO / AlphaBridge
  ☆34Updated last week
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated last month
• tymor22 / tm-vec
  ☆68Updated 9 months ago