PLM-interact: extending protein language models to predict protein-protein interactions.
☆72Aug 29, 2025Updated 11 months ago
Alternatives and similar repositories for PLM-interact
Users that are interested in PLM-interact are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast deep learning methods for large-scale protein-protein interaction screening☆133Aug 3, 2025Updated last year
- Protein-Protein Language Model with Novel Attention Mechanisms for Enhanced Inter-Protein Contact and Interaction Prediction☆65Jul 18, 2026Updated 3 weeks ago
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆18Dec 21, 2025Updated 7 months ago
- ☆33Jun 1, 2024Updated 2 years ago
- Local Interaction Score (LIS) for structure prediction analysis☆84Jul 28, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Learning the language of protein-protein interactions☆155Jun 15, 2026Updated last month
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆120Feb 19, 2026Updated 5 months ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Apr 27, 2025Updated last year
- Rank binders by structure modeling☆17Apr 10, 2026Updated 4 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆257Jan 3, 2026Updated 7 months ago
- [NeurIPS 2025] PRING: Rethinking Protein-Protein Interaction Prediciton from Pairs to Graphs☆23Oct 1, 2025Updated 10 months ago
- ☆82Jun 10, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆33Aug 27, 2025Updated 11 months ago
- ☆258Feb 12, 2026Updated 6 months ago
- ProteomeLM: A proteome-scale language model allowing fast prediction of protein-protein interactions and gene essentiality across taxa☆36Jun 10, 2026Updated 2 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆131Oct 30, 2025Updated 9 months ago
- ☆179Jul 24, 2026Updated 3 weeks ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆64Apr 29, 2025Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆263Mar 26, 2026Updated 4 months ago
- SpatialPPIv2: Enhancing protein–protein interaction prediction through graph neural networks with protein language models.☆28Jan 8, 2026Updated 7 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ESMDynamic repo☆26Jun 26, 2026Updated last month
- ☆12Nov 16, 2023Updated 2 years ago
- AbBiBench (Antibody Binding Benchmarking), a benchmarking framework for optimizing antibody binding affinity.☆42May 14, 2026Updated 3 months ago
- A deep learning framework (CreoPep) for target-specific design and optimization of conotoxin peptides☆16Mar 28, 2026Updated 4 months ago
- Linear-time prediction of proteome-scale microbial protein interactions☆40Updated this week
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆29Nov 20, 2025Updated 8 months ago
- Latents-based conformational control in OpenFold3.☆75May 25, 2026Updated 2 months ago
- ☆78May 4, 2026Updated 3 months ago
- Generative modeling of molecular dynamics trajectories☆224Mar 22, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Baseline model for PPB-Affinity benchmark data☆43May 21, 2025Updated last year
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆25May 3, 2025Updated last year
- Potts model-based protein sequence design☆110Jul 1, 2026Updated last month
- In silico directed evolution of peptide binders with AlphaFold☆274Apr 24, 2026Updated 3 months ago
- No description yet.☆17Aug 8, 2024Updated 2 years ago
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆148Jul 10, 2026Updated last month
- ☆16Jun 11, 2021Updated 5 years ago