biotite-dev / fastpdbLinks
A high performance drop-in replacement for Biotite's PDBFile.
☆39Updated 2 months ago
Alternatives and similar repositories for fastpdb
Users that are interested in fastpdb are comparing it to the libraries listed below
Sorting:
- Python package to manage protein structures and their annotations☆43Updated last year
- A Unified Approach to Protein Engineering☆42Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated last month
- ☆36Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆40Updated last year
- Source code and examples for AlphaFold Unmasked☆73Updated 2 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆30Updated last week
- Kuhlman Lab Installation of AlphaFold3☆29Updated 2 months ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆26Updated 5 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆40Updated 2 months ago
- ☆30Updated 2 months ago
- Efficient manipulation of protein structures in Python☆55Updated 9 months ago
- Metrics for our protein design competitions.☆34Updated 9 months ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆35Updated 2 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Updated last week
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated 2 months ago
- Parametric Building of de novo Functional Topologies☆45Updated 3 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆30Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆21Updated 2 months ago
- ☆20Updated last year
- ☆43Updated 6 months ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- ☆48Updated 8 months ago
- Python interface for the RCSB PDB search API.☆64Updated 4 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆90Updated 2 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated 2 months ago
- random colab notebooks for biology☆25Updated 4 months ago
- Fragment binding prediction with ColabFold☆35Updated 4 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆63Updated 8 months ago