A high performance drop-in replacement for Biotite's PDBFile.
☆43Jun 21, 2026Updated 2 months ago
Alternatives and similar repositories for fastpdb
Users that are interested in fastpdb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Visualize structure data from Biotite with PyMOL☆26Mar 16, 2025Updated last year
- A bridge between Biotite and OpenMM☆15Mar 16, 2025Updated last year
- Adding hydrogens to molecular models☆64Nov 24, 2025Updated 9 months ago
- Clusters protein chains based on CA distance difference☆19Jul 22, 2026Updated last month
- Generated color schemes for sequence alignment visualizations☆18Jul 20, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A generic mechanism for describing views used in molecular visualizations☆66Updated this week
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Aug 29, 2026Updated 2 weeks ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆158Updated this week
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆106Jun 9, 2025Updated last year
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆39Jul 28, 2022Updated 4 years ago
- Metrics for our protein design competitions.☆36Nov 1, 2024Updated last year
- A lightweight, fast pocket finder in Python.☆94Jul 22, 2026Updated last month
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated last year
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A comprehensive library for computational molecular biology☆970Updated this week
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆47Nov 14, 2025Updated 10 months ago
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆100Aug 7, 2026Updated last month
- Molstar Stories Webapp☆22Sep 10, 2026Updated last week
- C-library for calculating Solvent Accessible Surface Areas☆206May 31, 2026Updated 3 months ago
- Cython implementation of PDB -> DataFrame parsing☆34May 23, 2026Updated 3 months ago
- It's a package for evaluation of predicted poses, right?☆78Jul 13, 2026Updated 2 months ago
- ☆102Updated this week
- Fast indexing and search of discontinuous motifs in protein structures☆216Jul 10, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆16Dec 10, 2024Updated last year
- Tutorial files☆12Aug 7, 2024Updated 2 years ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- ☆16Jun 11, 2021Updated 5 years ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆14Aug 21, 2026Updated 3 weeks ago
- TMol - Rosetta on the GPU☆92Updated this week
- ☆18Aug 28, 2025Updated last year
- Docking Tool Benchmarking Workflow☆25Jul 17, 2024Updated 2 years ago
- A Python platform for Structural Bioinformatics☆58Jul 14, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated last year
- Files and utilities for protein-emoji☆26Nov 4, 2022Updated 3 years ago
- A bunch of shell utilities for dealing the silent files☆82Apr 6, 2026Updated 5 months ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆95Jul 10, 2025Updated last year
- Binding pocket optimization based on force fields and docking scoring functions☆39Mar 19, 2025Updated last year
- Ligand binding site prediction and virtual screening☆12Oct 26, 2018Updated 7 years ago
- ☆44Aug 29, 2025Updated last year