biotite-dev / fastpdb

Related projects ⓘ

Alternatives and complementary repositories for fastpdb

• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆40Updated 8 months ago
• silicogenesis / protkit
  A Unified Approach to Protein Engineering
  ☆39Updated 4 months ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆53Updated last month
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆62Updated 4 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆39Updated 2 weeks ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆32Updated last year
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆22Updated 2 months ago
• bwicky / oligomer_hallucination
  ☆35Updated 11 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆33Updated 2 months ago
• JudeWells / chainsaw
  ☆29Updated last month
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆41Updated this week
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆18Updated 3 months ago
• biotite-dev / ammolite
  Visualize structure data from Biotite with PyMOL
  ☆18Updated last year
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆20Updated 2 weeks ago
• biocryst / biozernike
  Protein structure descriptors and alignment based on 3D Zernike moments.
  ☆33Updated 9 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆43Updated 2 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 8 months ago
• conradry / prtm
  Deep learning for protein science
  ☆30Updated 5 months ago
• TobiasHeOl / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆13Updated 5 months ago
• guyuehuo / opendock
  ☆31Updated last month
• cmbi / dssp
  The DSSP building software
  ☆37Updated last year
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆71Updated 2 months ago
• whitead / protein-emoji
  Files and utilities for protein-emoji
  ☆20Updated 2 years ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆25Updated 7 months ago
• Boehringer-Ingelheim / pyPept
  pyPept: a python library to generate atomistic 2D and 3D representations of peptides
  ☆60Updated 2 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆45Updated 5 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆32Updated 11 months ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆45Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆30Updated 2 years ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆35Updated 7 months ago