Alternatives and similar repositories for fastpdb

Users that are interested in fastpdb are comparing it to the libraries listed below

• silicogenesis / protkit
  A Unified Approach to Protein Engineering
  ☆41Updated last year
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆45Updated last year
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆25Updated 8 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• bwicky / oligomer_hallucination
  ☆37Updated 2 years ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆76Updated 2 months ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated last week
• MSDLLCpapers / promb
  Humanness of de-novo designed proteins
  ☆37Updated 8 months ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆29Updated 10 months ago
• LPDI-EPFL / topobuilder
  Parametric Building of de novo Functional Topologies
  ☆44Updated 3 years ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆38Updated 4 months ago
• jwohlwend / minifold
  MiniFold: Simple, Fast and Accurate Protein Structure Prediction
  ☆82Updated 6 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated 2 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆35Updated 2 years ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆32Updated 3 years ago
• patrickbryant1 / Cfold
  Structure prediction of alternative protein conformations
  ☆80Updated 11 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆61Updated 4 months ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated 2 years ago
• TurtleTools / portein
  2D portraits of 3D protein structures
  ☆27Updated 4 months ago
• rcsb / py-rcsbsearchapi
  Python interface for the RCSB PDB search API.
  ☆65Updated 10 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆34Updated last year
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 6 months ago
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆36Updated 9 months ago
• anton-bushuiev / ProteinTTT
  One protein is all you need
  ☆64Updated last month
• t03i / FlatProt
  A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.
  ☆21Updated 6 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆61Updated 8 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆46Updated 8 months ago
• fteufel / alphafold-peptide-receptors
  Identifying peptide-receptor interactions using AlphaFold-Multimer
  ☆27Updated 2 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆73Updated 10 months ago
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆40Updated 4 years ago