TurtleTools / portein
2D portraits of 3D protein structures
☆15Updated 7 months ago
Related projects: ⓘ
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆23Updated 10 months ago
- Ultra-fast in-silico structure mutation☆32Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆21Updated last month
- Python package to manage protein structures and their annotations☆40Updated 6 months ago
- Some scripts that I keep using over and over.☆17Updated 6 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆34Updated 5 months ago
- ☆34Updated 6 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆28Updated 4 months ago
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated last month
- Structure-Informed Protein Language Model☆26Updated 7 months ago
- Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.☆26Updated 2 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆27Updated last year
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆26Updated 2 weeks ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆23Updated 5 months ago
- Docking Tool Benchmarking Workflow☆16Updated 2 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆18Updated 2 weeks ago
- ☆31Updated this week
- ☆27Updated 4 months ago
- Code for deep learning guided design of dynamic proteins☆16Updated 2 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆58Updated 2 months ago
- An open-source library for the analysis of protein interactions.☆29Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆25Updated 5 months ago
- ☆32Updated 8 months ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆29Updated 3 years ago
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆19Updated last month
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆22Updated 3 weeks ago
- ☆19Updated 2 years ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆34Updated last year
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆23Updated this week