2D portraits of 3D protein structures
☆27Mar 12, 2026Updated last month
Alternatives and similar repositories for portein
Users that are interested in portein are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Jun 8, 2023Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Aug 9, 2023Updated 2 years ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- A collaborative notebook for genes and genomes☆13Updated this week
- A benchmark dataset for protein-ligand co-folding prediction☆58Aug 13, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Apr 16, 2026Updated 2 weeks ago
- ☆18Aug 28, 2023Updated 2 years ago
- Protein surface topographical mapping tool☆30Aug 17, 2023Updated 2 years ago
- ☆13Mar 17, 2024Updated 2 years ago
- Clusters protein chains based on CA distance difference☆17Mar 18, 2026Updated last month
- A Java library for handling text and BinaryCIF files.☆13Jan 13, 2026Updated 3 months ago
- Javascript package for embedding sequence logos☆19Jun 16, 2025Updated 10 months ago
- Docking Tool Benchmarking Workflow☆25Jul 17, 2024Updated last year
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repository for the SCS Spring School on Digital Chemistry☆21Apr 24, 2023Updated 3 years ago
- ProCare: A Point Cloud Registration Approach to Align Protein Cavities☆30Dec 30, 2022Updated 3 years ago
- ☆11Sep 2, 2024Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 11 months ago
- Predict protein thermostability with ML☆20Aug 20, 2024Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention☆60Mar 3, 2026Updated last month
- few-shot compound activity regression☆12Aug 19, 2024Updated last year
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆32Apr 21, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Nature color palette optimized for color-blind individuals☆20Aug 13, 2023Updated 2 years ago
- ☆12May 3, 2025Updated 11 months ago
- InteractionDrawer is a JavaScript library for the drawing of highly interactive 2D ligand interaction diagrams.☆28Oct 16, 2023Updated 2 years ago
- PyPEF – Pythonic Protein Engineering Framework☆14Updated this week
- BinaryCIF is a data format for storing text based CIF files using a more efficient binary encoding.☆31Oct 14, 2024Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆37May 26, 2021Updated 4 years ago
- Real-time structure motif searching in protein 3D structures using an inverted index strategy☆14Jul 19, 2025Updated 9 months ago
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 2 years ago
- ☆13Apr 4, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆20Feb 6, 2023Updated 3 years ago
- https://grasp.ufv.br/☆16Jul 6, 2023Updated 2 years ago
- A curated list of awesome protein design research, software and resources.☆16May 10, 2022Updated 3 years ago
- ☆10Dec 4, 2021Updated 4 years ago
- The Visualization of Protein-Ligand Graphs software that powers the PTGL☆16Apr 4, 2024Updated 2 years ago
- A toolkit for predicting the binding mode of small molecules interacting with proteins based on interfacial rigidification, as assessed b…☆10Nov 22, 2016Updated 9 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28May 17, 2022Updated 3 years ago