Alternatives and similar repositories for afdb-clusters-analysis

Users that are interested in afdb-clusters-analysis are comparing it to the libraries listed below

• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated 3 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated 2 years ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆47Updated 3 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated last year
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆26Updated 2 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆55Updated 9 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆22Updated 4 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆53Updated 11 months ago
• JudeWells / chainsaw
  ☆43Updated 11 months ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆35Updated this week
• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆12Updated last year
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆73Updated last week
• Bitbol-Lab / Phylogeny-MSA-Transformer
  Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…
  ☆17Updated 8 months ago
• romainstuder / evosite3d
  ☆20Updated last month
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated last year
• maovshao / PLMAlign
  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
  ☆20Updated last week
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year
• clairemcwhite / vcmsa
  ☆30Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆59Updated 2 months ago
• PDB-REDO / AlphaBridge
  ☆41Updated last week
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆70Updated 3 weeks ago
• TattaBio / gLM2
  ☆71Updated 11 months ago
• ncbi / SSDraw
  ☆85Updated 2 weeks ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆40Updated last year
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated 2 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 6 years ago
• ProteinsWebTeam / interpro7-api
  ☆18Updated last week