Alternatives and similar repositories for afdb-clusters-analysis

Users that are interested in afdb-clusters-analysis are comparing it to the libraries listed below

• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated 2 weeks ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆24Updated last year
• JudeWells / chainsaw
  ☆39Updated 8 months ago
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated 10 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆21Updated 2 weeks ago
• jurgjn / af-protein-universe
  ☆25Updated last year
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆31Updated this week
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆42Updated 3 years ago
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆53Updated 5 months ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆22Updated 3 weeks ago
• infernet-h2020 / DCAlign
  ☆11Updated last year
• maovshao / PLMAlign
  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
  ☆20Updated 5 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated last year
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆16Updated 2 years ago
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆14Updated 4 months ago
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆50Updated 7 months ago
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆45Updated 4 months ago
• clairemcwhite / vcmsa
  ☆30Updated last year
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆30Updated last year
• ProteinsWebTeam / interpro7-api
  ☆17Updated last week
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆38Updated 8 months ago
• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆19Updated 7 months ago
• ohuelab / SpatialPPI
  ☆10Updated last year
• ProteinUniverseAtlas / AFDB90v4
  ☆17Updated last year
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆14Updated 3 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year