Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
☆19Feb 8, 2024Updated 2 years ago
Alternatives and similar repositories for pmpnndiff
Users that are interested in pmpnndiff are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- ☆24Nov 6, 2024Updated last year
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12Nov 22, 2024Updated last year
- ☆32Oct 18, 2024Updated last year
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 2 years ago
- ☆10Apr 1, 2024Updated 2 years ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆294Dec 10, 2024Updated last year
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆23Jun 26, 2023Updated 3 years ago
- See http://dx.doi.org/10.1039/C7SC04156J for more details☆11Aug 28, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 10 months ago
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 4 months ago
- ☆19Oct 4, 2022Updated 3 years ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Jun 28, 2026Updated 3 weeks ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆74May 20, 2026Updated 2 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆134Nov 19, 2025Updated 8 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆42May 29, 2024Updated 2 years ago
- Docking Tool Benchmarking Workflow☆25Jul 17, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆77Sep 2, 2020Updated 5 years ago
- Code for paper: "Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design"☆75May 10, 2025Updated last year
- ☆217Sep 24, 2024Updated last year
- This is the official repository for our paper "UniSim: A Unified Simulator for Time-Coarsened Dynamics of Biomolecules" published in ICML…☆19Apr 14, 2026Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Versatile human antibody sequence design☆22Apr 12, 2026Updated 3 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆280Feb 14, 2024Updated 2 years ago
- Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training☆50Nov 24, 2024Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆144Nov 11, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆80Oct 27, 2021Updated 4 years ago
- A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2☆12Aug 28, 2023Updated 2 years ago
- ☆14Jun 5, 2024Updated 2 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆85May 27, 2026Updated last month
- Colorblind-friendly, perceptually uniform palettes for pymol☆21Jan 25, 2021Updated 5 years ago
- Fast protein backbone generation with SE(3) flow matching.☆327Jul 19, 2024Updated 2 years ago
- A bridge between Biotite and OpenMM☆15Mar 16, 2025Updated last year