steineggerlab / foldseek-analysis
Scripts to benchmark and train foldseek
☆33Updated 7 months ago
Alternatives and similar repositories for foldseek-analysis:
Users that are interested in foldseek-analysis are comparing it to the libraries listed below
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆44Updated last month
- ☆51Updated 9 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆48Updated 7 months ago
- ☆29Updated last year
- SaprotHub: Making Protein Modeling Accessible to All Biologists☆85Updated this week
- ☆77Updated 3 months ago
- Protein folding in Pymol☆104Updated this week
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆49Updated 9 months ago
- ☆49Updated 7 months ago
- Code for humanization of antibody and nanobody☆34Updated last month
- open source code for Tencent tFold☆71Updated this week
- ☆90Updated 6 months ago
- ☆66Updated 3 months ago
- AlphaFold-initiated replica exchange protein docking☆65Updated 5 months ago
- Convenience Python APIs for antibody numbering using ANARCI☆90Updated last month
- ☆104Updated 2 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆30Updated last month
- Efficient implementatin of ESM family.☆45Updated 3 weeks ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆50Updated 4 months ago
- Fitness landscapes for antibodies☆57Updated this week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆56Updated 8 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆120Updated last month
- A bunch of shell utilities for dealing the silent files☆54Updated last month
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆78Updated last month
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆27Updated 5 months ago
- A compilation of deep learning methods for protein design☆95Updated 2 years ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆39Updated 2 weeks ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆135Updated 4 months ago
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆28Updated 4 months ago
- ☆72Updated 2 months ago