Scripts to benchmark and train foldseek
☆40May 22, 2024Updated last year
Alternatives and similar repositories for foldseek-analysis
Users that are interested in foldseek-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 9 months ago
- ☆17Aug 10, 2020Updated 5 years ago
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- Demos of many Rosetta applications☆24Jun 10, 2025Updated 9 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,196Mar 10, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆25Apr 26, 2023Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆64Updated this week
- Very simple script for EPU users which adds beam tilt classes to the star file☆11Nov 3, 2023Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 10 months ago
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 2 years ago
- SIU: A Million-Scale Structural Small Molecule-Protein Interaction Dataset for Unbiased Bioactivity Prediction☆17Feb 17, 2025Updated last year
- ☆16Dec 10, 2024Updated last year
- Compressing protein structures effectively with torsion angles☆191Feb 10, 2026Updated last month
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆49Sep 25, 2024Updated last year
- A geometric deep learning method for refining and assessing protein complex structures.☆16Oct 22, 2022Updated 3 years ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆78Sep 9, 2025Updated 6 months ago
- ☆24Nov 14, 2025Updated 4 months ago
- ☆33Sep 19, 2025Updated 6 months ago
- MMseqs2 app to run on your workstation or servers☆105Updated this week
- ☆40Apr 24, 2018Updated 7 years ago
- ☆135Sep 14, 2022Updated 3 years ago
- Official implementation of Panacea: A foundation model for clinical trial design, recruitment, search, and summarization.☆18Dec 24, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆16Mar 18, 2026Updated last week
- Bilingual Language Model for Protein Sequence and Structure☆306Mar 6, 2026Updated 3 weeks ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆150Apr 16, 2025Updated 11 months ago
- ☆21Aug 22, 2022Updated 3 years ago
- ☆19Apr 14, 2025Updated 11 months ago
- Public version for Distance-AF☆31Aug 17, 2025Updated 7 months ago
- ☆21Sep 12, 2024Updated last year
- pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files.…☆13Sep 15, 2022Updated 3 years ago
- Contact map alignment☆43Feb 3, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Virus Protein Structural Analysis Toolkit☆13Sep 9, 2024Updated last year
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- ☆18Jan 13, 2023Updated 3 years ago
- Efficient manipulation of protein structures in Python☆65Sep 27, 2025Updated 5 months ago
- a toolbox for the manipulation, modelling and analysis of molecular structures☆27Nov 27, 2025Updated 4 months ago
- Multiple sequence aligner for protein and DNA/RNA.☆23Jan 3, 2018Updated 8 years ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆46Aug 2, 2025Updated 7 months ago