Deep learning + physical modeling for 3D protein metal ion binding prediction
☆14Feb 24, 2025Updated last year
Alternatives and similar repositories for ESMBind
Users that are interested in ESMBind are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 6 months ago
- Metal and Water prediction☆14Feb 5, 2025Updated last year
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 4 months ago
- ☆16Mar 28, 2025Updated last year
- ☆12May 3, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Apr 29, 2026Updated 3 weeks ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Feb 29, 2024Updated 2 years ago
- ☆45Jan 10, 2024Updated 2 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆23Oct 31, 2025Updated 6 months ago
- ☆16Dec 10, 2024Updated last year
- Implementation for SuperWater☆48Jan 9, 2026Updated 4 months ago
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆34Aug 23, 2024Updated last year
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BioLiP2 database curation and web interface☆33Jun 19, 2025Updated 11 months ago
- ☆55Mar 12, 2026Updated 2 months ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- screenlamp is a Python toolkit for hypothesis-driven virtual screening☆24Mar 19, 2018Updated 8 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆48Oct 28, 2023Updated 2 years ago
- ☆18Aug 28, 2023Updated 2 years ago
- Rank binders by structure modeling☆16Apr 10, 2026Updated last month
- Fourier analysis and subtomogram averaging of heterogenic cylindrical structures☆17May 2, 2026Updated 3 weeks ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆168Mar 28, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ML toolset for creating TED: The Encyclopedia of Domains☆26May 29, 2025Updated 11 months ago
- BioMetAll is a command line application to allow the identification of metal-binding sites in proteins from backbone preorganization.☆13May 10, 2024Updated 2 years ago
- PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT☆18May 14, 2026Updated last week
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Design and documentation for the 2p microscope.☆17Feb 20, 2025Updated last year
- Code for deep learning guided design of dynamic proteins☆33Jul 16, 2024Updated last year
- Efficient manipulation of protein structures in Python☆68Sep 27, 2025Updated 7 months ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated 9 months ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Jun 8, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A diffusion model for structure-based drug design with faster inference from learned representations of protein structure.☆31Dec 18, 2023Updated 2 years ago
- VariantFormer: A hierarchical transformer integrating DNA sequences with genetic variations☆31May 3, 2026Updated 3 weeks ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆43Dec 18, 2025Updated 5 months ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆31Aug 9, 2024Updated last year
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 2 years ago
- ☆24Nov 14, 2025Updated 6 months ago
- protein structure generation with sparse all-atom denoising models☆62Apr 23, 2026Updated last month