mgalardini / pdb2uniprot
Convert PDB residues to their Uniprot equivalents
☆16Updated 4 years ago
Alternatives and similar repositories for pdb2uniprot:
Users that are interested in pdb2uniprot are comparing it to the libraries listed below
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆50Updated last month
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆79Updated 9 months ago
- Tools for annotation, processing and ML for antibody sequences☆24Updated 2 weeks ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆82Updated 11 months ago
- ☆28Updated 8 months ago
- Fast and accurate protein structure prediction☆49Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆54Updated last month
- A domain parser for Alphafold models☆32Updated last year
- Evolutionary velocity with protein language models☆84Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆34Updated 4 months ago
- ☆21Updated last year
- Python package and command line tool for epitope prediction☆49Updated 5 months ago
- ColabFold protocol☆48Updated 3 months ago
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆18Updated 4 months ago
- ☆33Updated 3 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆40Updated last week
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated last month
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆64Updated last year
- Python package to manage protein structures and their annotations☆41Updated 10 months ago
- a collection of colabs useful for molecular biology☆30Updated 10 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year
- ☆49Updated 7 months ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year
- Predict the structure of immune receptor proteins☆48Updated 2 months ago
- A platform to do RNA science☆27Updated 3 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆54Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequences☆49Updated last year