Alternatives and similar repositories for protein_mutation_scoring

Users that are interested in protein_mutation_scoring are comparing it to the libraries listed below

• aggelos-michael-papadopoulos / ParaSurf
  [Bioinformatics 2025] Official implementation of the paper "ParaSurf: A Surface-Based Deep Learning Approach for Paratope-Antigen Interac…
  ☆24Updated last month
• bouralab / Prop3D
  A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…
  ☆38Updated last year
• zongmingchua / cafa5
  Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)
  ☆15Updated last year
• adaptyvbio / ProtFill
  Inpainting protein sequence and structure
  ☆12Updated 2 years ago
• MSDLLCpapers / promb
  Humanness of de-novo designed proteins
  ☆31Updated 6 months ago
• the-protein-engineering-tournament / pet-pilot-2023
  Results and data from the pilot round of the Protein Engineering Tournament
  ☆30Updated 7 months ago
• mabr3112 / ProtFlow
  A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…
  ☆28Updated last week
• anton-bushuiev / ProteinTTT
  One protein is all you need
  ☆50Updated 2 weeks ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆19Updated last year
• ahaldane / Mi3-GPU
  ☆18Updated 8 months ago
• skalyaanamoorthy / PSLMs
  ☆21Updated last year
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 2 months ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• daisybio / data-leakage-ppi-prediction
  Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
  ☆26Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 8 months ago
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆24Updated 5 months ago
• willsheffler / worms
  Protein Origami via Genetic Fusions
  ☆14Updated 3 years ago
• SNU-CSSB / RF2-Lite
  ☆31Updated last year
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 2 months ago
• HySonLab / Directed_Evolution
  Protein Design by Machine Learning guided Directed Evolution
  ☆46Updated 7 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• Structurebiology-BNL / ESMBind
  Deep learning + physical modeling for 3D protein metal ion binding prediction
  ☆12Updated 8 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆34Updated 2 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆47Updated 6 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆20Updated 4 months ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆27Updated 8 months ago
• JSchlensok / VespaG
  Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction
  ☆15Updated 2 months ago
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated last year
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated 2 years ago
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆27Updated 2 years ago