sokrypton / ColabBio
random colab notebooks for biology
☆25Updated 6 months ago
Alternatives and similar repositories for ColabBio:
Users that are interested in ColabBio are comparing it to the libraries listed below
- ☆20Updated 4 months ago
- Metrics for our protein design competitions.☆24Updated 4 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆27Updated 2 years ago
- Efficient manipulation of protein structures in Python☆51Updated 4 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated last month
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆23Updated last year
- ☆62Updated 2 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆41Updated 3 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆35Updated 5 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆27Updated 3 months ago
- ☆33Updated 2 months ago
- Tutorial files☆11Updated 7 months ago
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆28Updated last year
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆47Updated 7 months ago
- ☆36Updated last year
- Ultra-fast in-silico structure mutation☆32Updated 2 years ago
- Template-based protein design with Raygun☆56Updated 4 months ago
- ☆26Updated 4 months ago
- dMaSIF implementation for google colab☆30Updated last year
- Source code and examples for AlphaFold Unmasked☆59Updated 3 weeks ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 9 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆65Updated 6 months ago
- A benchmark for 3D biomolecular structure prediction models☆53Updated 2 months ago
- ☆33Updated 5 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆41Updated 3 months ago
- Clusters protein chains based on CA distance difference☆13Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆61Updated last year
- Efficient implementatin of ESM family.☆53Updated last month
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆28Updated 6 months ago
- AlphaBind code + model accompanying pre-print☆47Updated 2 months ago