random colab notebooks for biology
☆26Aug 23, 2025Updated last year
Alternatives and similar repositories for ColabBio
Users that are interested in ColabBio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Tutorial files☆12Aug 7, 2024Updated 2 years ago
- GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the fam…☆26Jul 3, 2016Updated 10 years ago
- PyPEF – Pythonic Protein Engineering Framework☆16Updated this week
- Template-based protein design with Raygun☆154Jul 30, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆15Mar 28, 2025Updated last year
- A Python 3 script for cleaning up the PDB file☆11Dec 20, 2017Updated 8 years ago
- ☆214Apr 21, 2025Updated last year
- ☆121Dec 7, 2022Updated 3 years ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- ☆15Jun 19, 2026Updated 3 months ago
- ☆16Jun 11, 2021Updated 5 years ago
- Biomolecular co-folding, binder filtering, and nanobody design☆91Jun 28, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code for running RFdiffusion☆15Oct 23, 2025Updated 10 months ago
- ☆65Apr 9, 2024Updated 2 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- ☆17May 18, 2026Updated 4 months ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆17Feb 6, 2026Updated 7 months ago
- Homomer symmetry prediction from protein sequence☆46Mar 13, 2025Updated last year
- ☆34Feb 5, 2025Updated last year
- ☆47Sep 16, 2024Updated 2 years ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆38Dec 21, 2023Updated 2 years ago
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated last year
- ☆84Jun 10, 2026Updated 3 months ago
- BioLiP2 database curation and web interface☆36Jun 19, 2025Updated last year
- Sandbox for Deep-Learning based Computational Protein Design☆122Aug 14, 2026Updated last month
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆129Apr 23, 2026Updated 4 months ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆12May 10, 2026Updated 4 months ago
- Compressing protein structures effectively with torsion angles☆196Sep 7, 2026Updated last week
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆30Jan 17, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- ☆57Jan 10, 2025Updated last year
- ☆23Jul 4, 2021Updated 5 years ago
- Code and Data for Generative modeling for AAV design☆10Nov 13, 2023Updated 2 years ago
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆26Jun 8, 2026Updated 3 months ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago