sokrypton / ColabBio
random colab notebooks for biology
☆22Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for ColabBio
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆33Updated 2 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆62Updated 4 months ago
- ☆22Updated 2 months ago
- Ultra-fast in-silico structure mutation☆32Updated last year
- ☆45Updated 3 weeks ago
- ☆38Updated 2 months ago
- ☆35Updated 11 months ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆27Updated last year
- Tutorial files☆11Updated 3 months ago
- Efficient manipulation of protein structures in Python☆39Updated 2 weeks ago
- An antibody-specific language model focusing on NGL prediction☆21Updated 2 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆30Updated 5 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆47Updated 6 months ago
- Adapting protein language models for structure-conditioned design☆35Updated 3 months ago
- Generative diverse protein backbones by protein language model☆24Updated this week
- dMaSIF implementation for google colab☆29Updated last year
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆19Updated 10 months ago
- Template-based protein design with Raygun☆44Updated 2 weeks ago
- Aligning protein generative models with experimental fitness☆71Updated last month
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆42Updated 3 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆25Updated last month
- Fast deep learning methods for large-scale protein-protein interaction screening☆24Updated last month
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆20Updated last month
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆24Updated 3 weeks ago
- ☆23Updated 3 weeks ago
- AlphaBind code + model accompanying pre-print☆25Updated this week
- The software system of improving AlphaFold2- and AlphaFold-Multimer-based protein tertiary & quaternary structure prediction. It was deve…☆26Updated 11 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 4 months ago
- Some scripts that I keep using over and over.☆18Updated 8 months ago
- PLM based active learning model for protein engineering☆45Updated 3 months ago