samgoldman97 / enzyme-datasetsLinks
Enzyme datasets used to benchmark enzyme-substrate promiscuity models
☆40Updated 4 years ago
Alternatives and similar repositories for enzyme-datasets
Users that are interested in enzyme-datasets are comparing it to the libraries listed below
Sorting:
- Extension of ThermoMPNN for double mutant predictions☆46Updated last month
- Python package to atom map, correct and suggest enzymatic reactions☆39Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 4 months ago
- ☆39Updated last year
- Docking Tool Benchmarking Workflow☆24Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 5 months ago
- ☆36Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆70Updated 3 weeks ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Updated last week
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆52Updated 4 months ago
- ☆29Updated 9 months ago
- ☆71Updated 7 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆29Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- An antibody-specific language model focusing on NGL prediction☆31Updated last year
- Efficient manipulation of protein structures in Python☆60Updated last month
- Bioinformatics and Cheminformatics protocols for peptide analysis☆43Updated 2 years ago
- ☆41Updated 2 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆67Updated 4 months ago
- ☆36Updated 2 years ago
- ☆44Updated last year
- ☆90Updated last month
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆39Updated 3 months ago
- Making Protein folding accessible to all!☆24Updated last year
- ☆71Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆81Updated last week
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Kuhlman Lab Installation of AlphaFold3☆36Updated last month