samgoldman97 / enzyme-datasetsLinks
Enzyme datasets used to benchmark enzyme-substrate promiscuity models
☆39Updated 4 years ago
Alternatives and similar repositories for enzyme-datasets
Users that are interested in enzyme-datasets are comparing it to the libraries listed below
Sorting:
- ☆39Updated last year
- Extension of ThermoMPNN for double mutant predictions☆43Updated 2 months ago
- Docking Tool Benchmarking Workflow☆24Updated last year
- ☆35Updated 2 years ago
- Python package to atom map, correct and suggest enzymatic reactions☆39Updated last year
- ☆71Updated 6 months ago
- ☆28Updated 8 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆66Updated 10 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 3 months ago
- ☆36Updated last year
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆54Updated 4 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- Efficient manipulation of protein structures in Python☆58Updated last week
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆66Updated 2 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated last year
- ☆20Updated 11 months ago
- Physical energy function for protein sequence design☆33Updated 2 years ago
- ☆29Updated 11 months ago
- Structure-Informed Protein Language Model☆35Updated last year
- Official repository of EnzymeFlow☆94Updated 10 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆28Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆36Updated 2 years ago
- Code for deep learning guided design of dynamic proteins☆30Updated last year
- ☆20Updated 3 years ago
- ☆42Updated last month
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆17Updated 6 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆50Updated 2 months ago