samgoldman97 / enzyme-datasets
Enzyme datasets used to benchmark enzyme-substrate promiscuity models
☆29Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for enzyme-datasets
- ☆35Updated 11 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆35Updated 7 months ago
- ☆16Updated 2 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆25Updated last month
- ☆45Updated 3 weeks ago
- ☆46Updated 9 months ago
- Docking Tool Benchmarking Workflow☆20Updated 4 months ago
- ☆24Updated last year
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆31Updated 6 months ago
- ☆24Updated 3 months ago
- ☆38Updated 2 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆20Updated 4 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆34Updated 4 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- ☆20Updated last year
- Making Protein folding accessible to all!☆18Updated 10 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 8 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆62Updated 4 months ago
- Ultra-fast in-silico structure mutation☆32Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆32Updated 2 years ago
- AlphaFold-initiated replica exchange protein docking☆45Updated 3 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆35Updated last year
- dMaSIF implementation for google colab☆29Updated last year
- PyDock Tutorial☆30Updated 6 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 4 months ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆38Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆33Updated 2 months ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆24Updated 3 weeks ago
- An antibody-specific language model focusing on NGL prediction☆21Updated 2 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆30Updated 5 months ago