Alternatives and similar repositories for FP-Zernike

Users that are interested in FP-Zernike are comparing it to the libraries listed below

• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated 3 weeks ago
• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆59Updated 2 weeks ago
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆53Updated 2 months ago
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 2 weeks ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• issararab / PEvoLM
  Protein Sequence Evolutionary Information Language Model
  ☆13Updated 2 years ago
• NRGlab / Surfaces
  ☆15Updated last month
• concept-lab / SiteFerret
  Clustering of SES virtual probes for pocket generation and ranking via Isolation Forest
  ☆13Updated 2 years ago
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆16Updated 8 months ago
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆37Updated 4 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆56Updated 5 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆20Updated 3 months ago
• Hoecker-Lab / pocketoptimizer
  Binding pocket optimization based on force fields and docking scoring functions
  ☆34Updated 7 months ago
• Junjie-Zhu / IDPFold
  Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold
  ☆24Updated last year
• genki-kudo / Pocket-to-Concavity
  Pocket to Concavity is a tool for refinement of Protein-Ligand binding site shape from alpha-spheres
  ☆16Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆43Updated last month
• giacomo-janson / sam2
  Deep generative modeling of protein structural ensembles
  ☆28Updated last month
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 11 months ago
• tommyhuangthu / FASPR
  Fast, accurate, and deterministic protein side-chain packing
  ☆37Updated 8 months ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆41Updated 6 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆34Updated last year
• tiwarylab / alphafold2rave
  ☆69Updated last year
• patrickbryant1 / RareFold
  Structure prediction and design of proteins with noncanonical amino acids
  ☆108Updated last week
• KhondamirRustamov / FoldCraft
  ☆42Updated 2 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆12Updated last year
• svats73 / mdml
  mdml: Deep Learning for Molecular Simulations
  ☆47Updated 5 months ago
• Zuricho / AlphaFold3_Result_Visualize
  A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib
  ☆20Updated last year
• Bitbol-Lab / DiffPALM
  Differentiable Pairing using Alignment-based Language Models
  ☆24Updated last year
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆15Updated 2 years ago