Alternatives and similar repositories for gafl

Users that are interested in gafl are comparing it to the libraries listed below

• KrishnaswamyLab / ProtSCAPE
  ☆19Updated last year
• JocelynSong / NAEPro
  ☆12Updated last year
• zanderharteveld / genesis
  protein backbone refinement
  ☆15Updated last year
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆22Updated last month
• Vincentx15 / atom2D
  ☆12Updated 11 months ago
• barricklab-at-jhu / SVD-of-MSAs
  This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…
  ☆11Updated last year
• rdilip / kanzi
  ☆21Updated 3 weeks ago
• Marco-Peg / GEP
  ☆15Updated last year
• thejonaslab / vonmises-icml-2023
  ☆10Updated 2 years ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆35Updated last year
• mgreenig / IgCraft
  Versatile human antibody sequence design
  ☆19Updated 5 months ago
• flagshippioneering / pi-rldif
  Code for RL-DIF
  ☆16Updated 4 months ago
• bjing2016 / scalar-fields
  Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms
  ☆29Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• akds / CoevolveML
  Deploying synthetic coevolution and machine learning to engineer protein-protein interactions
  ☆16Updated 2 years ago
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆47Updated 2 years ago
• DeepGraphLearning / SiamDiff
  Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
  ☆42Updated 2 years ago
• ai4protein / VenusX
  ☆14Updated last month
• Vincentx15 / atomsurf
  ☆23Updated last month
• LDeng0205 / StaB-ddG
  Predicting mutational effects on protein binding from folding energy. ICML 2025.
  ☆31Updated 2 months ago
• adaptyvbio / ProtFill
  Inpainting protein sequence and structure
  ☆12Updated last year
• Minys233 / Dynaformer
  ☆33Updated last year
• flagshippioneering / flash_ipa
  [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.
  ☆32Updated last month
• alicetinglab / ConformationalBiasing
  Code for designing biased protein states
  ☆14Updated last week
• guanjq / confopt_official
  The official implementation of Energy-Inspired Molecular Conformation Optimization (ICLR 2022)
  ☆36Updated 3 years ago
• BioinfoMachineLearning / GCPNet
  A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)
  ☆49Updated 6 months ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆64Updated 5 months ago
• Graylab / MaskedProteinEnT
  ☆12Updated 10 months ago
• Sundw-818 / DSR
  The code for NeurIPS 2023 paper DSR
  ☆13Updated 2 years ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆43Updated last month