A framework for training energy-based diffusion models for sampling and energy estimation.
☆110May 10, 2026Updated 4 months ago
Alternatives and similar repositories for ScoreMD
Users that are interested in ScoreMD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repo for transferable sampling of molecular systems☆50Sep 4, 2026Updated 2 weeks ago
- Timewarp is a research project using deep learning to accelerate molecular dynamics simulation.☆68Aug 27, 2026Updated 3 weeks ago
- Official implementation for paper: Sampling 3D Molecular Conformers with Diffusion Transformers (NeurIPS 2025)☆20Feb 3, 2026Updated 7 months ago
- Code for the paper Progressive Inference-Time Annealing of Diffusion Models for Sampling from Boltzmann Densities.☆38Sep 5, 2026Updated 2 weeks ago
- A universal ML model to predict molecular dynamics trajectories with long time steps☆57Sep 9, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆22Apr 9, 2024Updated 2 years ago
- ☆154May 18, 2026Updated 4 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆90Sep 12, 2024Updated 2 years ago
- Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles☆21May 16, 2026Updated 4 months ago
- ☆15Oct 28, 2025Updated 10 months ago
- ☆15Sep 4, 2026Updated 2 weeks ago
- Disordered protein ensemble prediction☆16Updated this week
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆179Jun 25, 2026Updated 2 months ago
- PeptoneBench: evaluating protein ensembles across the order-disorder continuum☆22Mar 24, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆51Nov 4, 2025Updated 10 months ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆76Aug 22, 2026Updated last month
- Generative modeling of molecular dynamics trajectories☆228Mar 22, 2026Updated 6 months ago
- Machine Learning tools for Coarse Graining☆33Sep 14, 2026Updated last week
- Benchmarking code accompanying the release of `bioemu`☆65Aug 19, 2026Updated last month
- Flow-matching for coarse graining of miniproteins.☆20Nov 18, 2022Updated 3 years ago
- TrajCast: Force-Free MD Through Autoregressive Equivariant Networks☆91Sep 23, 2025Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆275Jul 24, 2025Updated last year
- ☆16Mar 5, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 4 months ago
- ☆27May 16, 2026Updated 4 months ago
- Learning Hamiltonian Flow Maps via Mean Flow Consistency for Large-Timestep Molecular Dynamics☆40Jul 4, 2026Updated 2 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆64Dec 16, 2025Updated 9 months ago
- PLaTITO is an open-source model for generative molecular dynamics of proteins.☆26May 6, 2026Updated 4 months ago
- A flow matching model for generating conformational ensembles of protein backbones.☆52May 22, 2026Updated 4 months ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆40Jul 22, 2025Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆545Mar 22, 2026Updated 6 months ago
- Protein Engineering via Exploration of an Energy Landscape☆147Sep 7, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆63Aug 5, 2026Updated last month
- ☆33Apr 16, 2026Updated 5 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 10 months ago
- ☆103Jul 9, 2026Updated 2 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆268Nov 5, 2025Updated 10 months ago
- ☆61Apr 7, 2026Updated 5 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year