A framework for training energy-based diffusion models for sampling and energy estimation.
☆110May 10, 2026Updated 3 months ago
Alternatives and similar repositories for ScoreMD
Users that are interested in ScoreMD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repo for transferable sampling of molecular systems☆51Jul 22, 2026Updated last month
- Timewarp is a research project using deep learning to accelerate molecular dynamics simulation.☆67Aug 27, 2026Updated last week
- Official implementation for paper: Sampling 3D Molecular Conformers with Diffusion Transformers (NeurIPS 2025)☆20Feb 3, 2026Updated 6 months ago
- Code for the paper Progressive Inference-Time Annealing of Diffusion Models for Sampling from Boltzmann Densities.☆38Jul 23, 2025Updated last year
- A universal ML model to predict molecular dynamics trajectories with long time steps☆57Jul 5, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆22Apr 9, 2024Updated 2 years ago
- ☆152May 18, 2026Updated 3 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆89Sep 12, 2024Updated last year
- Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles☆21May 16, 2026Updated 3 months ago
- ☆15Oct 28, 2025Updated 10 months ago
- ☆15Jun 25, 2026Updated 2 months ago
- Disordered protein ensemble prediction☆16Updated this week
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆179Jun 25, 2026Updated 2 months ago
- PeptoneBench: evaluating protein ensembles across the order-disorder continuum☆22Mar 24, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆51Nov 4, 2025Updated 9 months ago
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆76Aug 22, 2026Updated last week
- Generative modeling of molecular dynamics trajectories☆225Mar 22, 2026Updated 5 months ago
- Machine Learning tools for Coarse Graining☆32Aug 18, 2026Updated 2 weeks ago
- Benchmarking code accompanying the release of `bioemu`☆65Aug 19, 2026Updated 2 weeks ago
- TrajCast: Force-Free MD Through Autoregressive Equivariant Networks☆89Sep 23, 2025Updated 11 months ago
- Flow-matching for coarse graining of miniproteins.☆20Nov 18, 2022Updated 3 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆272Jul 24, 2025Updated last year
- ☆15Mar 5, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 3 months ago
- ☆27May 16, 2026Updated 3 months ago
- Learning Hamiltonian Flow Maps via Mean Flow Consistency for Large-Timestep Molecular Dynamics☆40Jul 4, 2026Updated last month
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆63Dec 16, 2025Updated 8 months ago
- PLaTITO is an open-source model for generative molecular dynamics of proteins.☆25May 6, 2026Updated 3 months ago
- A flow matching model for generating conformational ensembles of protein backbones.☆50May 22, 2026Updated 3 months ago
- [NeurIPS 2024] The implementation for the paper "Geometric Trajectory Diffusion Models".☆40Jul 22, 2025Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆544Mar 22, 2026Updated 5 months ago
- Protein Engineering via Exploration of an Energy Landscape☆143Aug 12, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆63Aug 5, 2026Updated 3 weeks ago
- ☆32Apr 16, 2026Updated 4 months ago
- ☆60Apr 7, 2026Updated 4 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆149Nov 11, 2025Updated 9 months ago
- ☆101Jul 9, 2026Updated last month
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆263Nov 5, 2025Updated 9 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year