hefeda / PGP
☆36Updated last year
Related projects ⓘ
Alternatives and complementary repositories for PGP
- Tool for modelling the CDRs of antibodies☆45Updated last year
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆47Updated 7 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- ☆21Updated 4 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆43Updated last week
- ☆45Updated 5 months ago
- ☆70Updated 6 months ago
- AlphaFold-initiated replica exchange protein docking☆45Updated 3 months ago
- A domain parser for Alphafold models☆32Updated 11 months ago
- Code for humanization of antibody and nanobody☆23Updated 3 weeks ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆34Updated 4 months ago
- ☆74Updated last month
- Fast and accurate protein domain segmentation using Invariant Point Attention☆26Updated 3 weeks ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆25Updated last year
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆64Updated 2 months ago
- A collection of *fold* tools☆19Updated 2 years ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆41Updated 5 months ago
- Fitness landscapes for antibodies☆51Updated 7 months ago
- ☆38Updated 2 months ago
- Structure-conditioned masked language modeling for protein sequence design☆60Updated 9 months ago
- Efficient manipulation of protein structures in Python☆39Updated 2 weeks ago
- PyDock Tutorial☆30Updated 6 years ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆37Updated 6 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆26Updated 4 years ago
- ☆20Updated last month
- Python package to atom map, correct and suggest enzymatic reactions☆35Updated 7 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆33Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆52Updated 9 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆40Updated 2 months ago