adaptyvbio / ProtFill
Inpainting protein sequence and structure
☆12Updated last year
Alternatives and similar repositories for ProtFill:
Users that are interested in ProtFill are comparing it to the libraries listed below
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆15Updated 11 months ago
- ☆9Updated last year
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆10Updated 8 months ago
- ☆16Updated 10 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆29Updated 3 months ago
- protein backbone refinement☆15Updated 4 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆31Updated 7 months ago
- random colab notebooks for biology☆22Updated 4 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆23Updated last year
- Adapting protein language models for structure-conditioned design☆34Updated 5 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆16Updated last month
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Updated 5 months ago
- Differentiable Pairing using Alignment-based Language Models☆17Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆16Updated last year
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆20Updated 5 months ago
- ☆11Updated last month
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆29Updated last week
- Code for "A Deep Learning Framework for Flexible Docking and Design"☆16Updated 2 years ago
- ☆33Updated 3 weeks ago
- ☆60Updated last month
- ☆16Updated last week
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆15Updated last year
- ☆11Updated last month
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Updated 4 months ago
- Interface-aware molecular generative framework for protein-protein interaction modulators☆11Updated 3 weeks ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16Updated 3 years ago
- Generative diverse protein backbones by protein language model☆29Updated last month
- ☆11Updated last year
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆24Updated 2 weeks ago
- ☆16Updated last month