Alternatives and similar repositories for pyRIF

Users that are interested in pyRIF are comparing it to the libraries listed below

• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 4 years ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 5 months ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆34Updated 2 years ago
• Furman-Lab / PatchMAN
  ☆27Updated 2 months ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆54Updated 3 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• PKUliujl / GeoSeqBuilder
  ☆30Updated 10 months ago
• tianlt / deepdirect
  ☆17Updated last year
• strauchlab / scaffold_design
  ☆18Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆22Updated 9 months ago
• skalyaanamoorthy / PSLMs
  ☆21Updated last year
• Merck / AbLEF
  Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction
  ☆13Updated last year
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated 2 years ago
• willsheffler / rif
  Rotamer Interaction Field Python Libraries for Computational Protein Design
  ☆13Updated 7 years ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆25Updated 8 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 5 months ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆28Updated last year
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 3 months ago
• LLNL / CRPCA
  Computationally Restoring the Potency of a Clinical Antibody
  ☆18Updated last year
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆18Updated 8 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆35Updated last year
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• debbiemarkslab / nanobody-polyreactivity
  Polyreactivity Website
  ☆17Updated 2 years ago
• Wublab / pythia_ppi
  PPI version of Pythia
  ☆25Updated 3 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆12Updated last year