Alternatives and similar repositories for pyRIF

Users that are interested in pyRIF are comparing it to the libraries listed below

• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 5 months ago
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆19Updated 6 years ago
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• Furman-Lab / PatchMAN
  ☆26Updated last month
• AmeyaHarmalkar / therML
  The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability
  ☆8Updated last year
• strauchlab / scaffold_design
  ☆17Updated last year
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆30Updated 2 years ago
• LPDI-EPFL / trivalent_cocktail
  ☆11Updated 5 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 3 years ago
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆24Updated 3 months ago
• RosettaCommons / FvHallucinator
  ☆27Updated 2 years ago
• LLNL / CRPCA
  Computationally Restoring the Potency of a Clinical Antibody
  ☆18Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆28Updated last year
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆15Updated 3 months ago
• PKUliujl / GeoSeqBuilder
  ☆27Updated 4 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 7 months ago
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆12Updated 4 years ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆32Updated 6 months ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆17Updated last year
• meilerlab / probabilities_design
  ☆13Updated 2 months ago
• Wublab / pythia_ppi
  PPI version of Pythia
  ☆11Updated 7 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 10 months ago
• haddocking / binding-affinity-benchmark
  Protein-protein binding affinity benchmark
  ☆15Updated 4 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 11 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆23Updated last year