Alternatives and similar repositories for pyRIF:

Users that are interested in pyRIF are comparing it to the libraries listed below

• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 2 months ago
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆26Updated 11 months ago
• Furman-Lab / PatchMAN
  ☆25Updated 7 months ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆23Updated this week
• RosettaCommons / FvHallucinator
  ☆26Updated 2 years ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆21Updated last year
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆19Updated 5 years ago
• strauchlab / scaffold_design
  ☆17Updated 11 months ago
• tommyhuangthu / EvoEF2
  a fast and accurate physical energy function extended from EvoEF for protein sequence design
  ☆25Updated last year
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• LPDI-EPFL / trivalent_cocktail
  ☆11Updated 4 years ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆15Updated last year
• PKUliujl / GeoSeqBuilder
  ☆25Updated last month
• luwei0917 / AlphaFold3_PPI
  ☆14Updated 9 months ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• ComputArtCMCG / ProBID-NET
  ☆14Updated 5 months ago
• tommyhuangthu / UniDesign
  a universal framework for computational protein design
  ☆35Updated last year
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 2 years ago
• willsheffler / rif
  Rotamer Interaction Field Python Libraries for Computational Protein Design
  ☆11Updated 7 years ago
• ak422 / DDAffinity
  ☆18Updated 5 months ago
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆13Updated 3 years ago
• WeiLab-Biology / DeepProSite
  ☆31Updated last year
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆30Updated 3 months ago
• uagaug / DeNovoHeterodimers
  Scripts and data deposition for de novo heterodimers manuscript
  ☆11Updated 6 years ago
• haddocking / binding-affinity-benchmark
  Protein-protein binding affinity benchmark
  ☆13Updated 3 weeks ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 8 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 7 months ago