psalveso / pyRIF
Using Rotamer Interaction Fields from RIFGen/Dock in python
☆16Updated 3 years ago
Alternatives and similar repositories for pyRIF:
Users that are interested in pyRIF are comparing it to the libraries listed below
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆25Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- ☆25Updated 7 months ago
- Some scripts that I keep using over and over.☆18Updated 2 months ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆19Updated 5 years ago
- ☆19Updated 2 years ago
- Making Protein folding accessible to all!☆21Updated last year
- ☆14Updated 9 months ago
- An accurate and efficient protein sequence design approach☆24Updated this week
- ☆26Updated 2 years ago
- ☆25Updated last month
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆21Updated last year
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆27Updated 11 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 2 years ago
- ☆17Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Scripts and data deposition for de novo heterodimers manuscript☆11Updated 6 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆32Updated 4 months ago
- De novo design of small molecule binding sites into proteins☆13Updated 3 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆15Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆24Updated 8 months ago
- Generative diverse protein backbones by protein language model☆31Updated 3 months ago
- ☆18Updated 4 months ago
- Rotamer Interaction Field Python Libraries for Computational Protein Design☆11Updated 7 years ago
- DLPacker☆30Updated 6 months ago
- ☆11Updated 4 years ago
- ☆62Updated 3 months ago
- ☆20Updated 2 years ago
- Tutorial files☆11Updated 7 months ago