strauchlab / scaffold_designLinks
☆17Updated last year
Alternatives and similar repositories for scaffold_design
Users that are interested in scaffold_design are comparing it to the libraries listed below
Sorting:
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16Updated 4 years ago
- Some scripts that I keep using over and over.☆18Updated 5 months ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- ☆9Updated 2 years ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆11Updated last year
- MEGADOCK on Google Colaboratory☆17Updated last year
- ☆26Updated last month
- ☆13Updated 2 months ago
- Generative diverse protein backbones by protein language model☆32Updated 6 months ago
- Interface-aware molecular generative framework for protein-protein interaction modulators☆14Updated 6 months ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆8Updated last year
- Physical energy function for protein sequence design☆30Updated 2 years ago
- ☆12Updated 4 years ago
- GUI for interactive graph-based analyses of hydrogen bond networks in crystal structures and MD trajectories.☆9Updated 2 years ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Updated 3 years ago
- ☆14Updated 4 months ago
- Tutorial files☆11Updated 10 months ago
- Demos of many Rosetta applications☆17Updated 2 weeks ago
- Protein Sequence Evolutionary Information Language Model☆12Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆23Updated last year
- ☆19Updated 2 years ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆15Updated 3 months ago
- Computationally Restoring the Potency of a Clinical Antibody☆18Updated last year
- What exactly are the non-canonical amino acids in the Rosetta database folder?☆11Updated 5 years ago
- EvolveX, a de novo antibody computational design pipeline.☆11Updated 6 months ago
- Calculate the RMSD between two protein structures☆12Updated 2 years ago
- ☆15Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆27Updated last year
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆16Updated 6 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆12Updated 3 months ago