jorgemf / DeepLatentMicrobiomeLinks
☆19Updated 4 years ago
Alternatives and similar repositories for DeepLatentMicrobiome
Users that are interested in DeepLatentMicrobiome are comparing it to the libraries listed below
Sorting:
- GTDB => NCBI☆14Updated 6 months ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 8 months ago
- ☆32Updated 3 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆18Updated 7 months ago
- KEGG Module Evaluation Tool☆29Updated last year
- Prophage Activity Estimator☆26Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Batch effects removal for microbiome data via conditional quantile regression☆28Updated 2 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated last month
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆19Updated last month
- AMBER: Assessment of Metagenome BinnERs☆30Updated 4 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Updated 11 months ago
- Strain Resolution ON Graphs☆47Updated last year
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Linking MAGs with 16S rRNA marker genes☆24Updated 4 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆19Updated 3 weeks ago
- Plot microbiome time series in parallel☆26Updated last year
- ☆20Updated 3 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 4 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 7 months ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year