Masked language models of biosynthetic gene clusters
☆18Jul 27, 2022Updated 4 years ago
Alternatives and similar repositories for bigcarp
Users that are interested in bigcarp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Dec 10, 2024Updated last year
- BGC Detection and Classification Using Deep Learning☆159Nov 11, 2023Updated 2 years ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆28Jan 9, 2026Updated 7 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Jul 21, 2026Updated 2 weeks ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- tree-aggregated compositional analysis for high-throughput sequencing data☆11Aug 24, 2022Updated 3 years ago
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆20Jul 27, 2026Updated last week
- incremental symbol learning for natural language understanding☆10Jun 12, 2023Updated 3 years ago
- ☆19Jul 27, 2026Updated last week
- 🦄 Shades of Purple — A professional theme with hand-picked & bold shades of purple for Base16.☆13Jan 13, 2023Updated 3 years ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- Python Implementation of Codon Adaption Index☆37Feb 1, 2023Updated 3 years ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- A biological dual-language foundation model☆12Jun 16, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ARM templates for deploying resources for Connected Field Service☆16Aug 26, 2025Updated 11 months ago
- ☆14Dec 10, 2018Updated 7 years ago
- ☆19Nov 26, 2020Updated 5 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆24Dec 20, 2024Updated last year
- ☆16Mar 1, 2025Updated last year
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆12Oct 7, 2019Updated 6 years ago
- QLoRA for Masked Language Modeling☆23Sep 11, 2023Updated 2 years ago
- The official repository for the ARSENAL model☆18Jul 3, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".☆13Jun 24, 2026Updated last month
- ☆16Feb 14, 2025Updated last year
- Python package to study microbial communities using metabolic modeling.☆135Jul 20, 2026Updated 3 weeks ago
- The auto mechanic finder is a web-based application. This is a platform which will allow customers to find the auto-mechanic from differe…☆10Jan 18, 2024Updated 2 years ago
- ☆16Aug 22, 2022Updated 3 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 9 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆49Dec 16, 2024Updated last year
- An R package for visualizing confounder control in meta-analyses☆11Jan 17, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 4 months ago
- Template course website for the Designing a Data Science Classroom workshop at rstudio::conf(2022).☆11Jul 27, 2022Updated 4 years ago
- ☆21Oct 22, 2024Updated last year
- 这里提供了一个yaml可以通过conda来快速无痛一键安装ESMfold,算是已经踩过所有通过官方安装遇到的暗坑了。☆20Jan 31, 2024Updated 2 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Python package of codon usage bias analysis tools☆21May 16, 2026Updated 2 months ago
- Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…☆24Apr 25, 2021Updated 5 years ago