Masked language models of biosynthetic gene clusters
☆18Jul 27, 2022Updated 4 years ago
Alternatives and similar repositories for bigcarp
Users that are interested in bigcarp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Dec 10, 2024Updated last year
- BGC Detection and Classification Using Deep Learning☆161Nov 11, 2023Updated 2 years ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆28Jan 9, 2026Updated 7 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆31Jul 21, 2026Updated last month
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- tree-aggregated compositional analysis for high-throughput sequencing data☆12Aug 24, 2022Updated 4 years ago
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆20Jul 27, 2026Updated last month
- incremental symbol learning for natural language understanding☆10Jun 12, 2023Updated 3 years ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- Python Implementation of Codon Adaption Index☆38Feb 1, 2023Updated 3 years ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- A biological dual-language foundation model☆11Jun 16, 2025Updated last year
- ARM templates for deploying resources for Connected Field Service☆16Aug 26, 2025Updated last year
- ☆14Dec 10, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Nov 26, 2020Updated 5 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- ☆16Mar 1, 2025Updated last year
- ☆260Jul 31, 2024Updated 2 years ago
- QLoRA for Masked Language Modeling☆23Sep 11, 2023Updated 2 years ago
- ☆16Feb 14, 2025Updated last year
- Python package to study microbial communities using metabolic modeling.☆135Updated this week
- ☆16Aug 22, 2022Updated 4 years ago
- ☆13Aug 18, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆50Dec 16, 2024Updated last year
- This repository contains reference data from the Richardson Lab at Duke.☆17Jul 26, 2023Updated 3 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Template course website for the Designing a Data Science Classroom workshop at rstudio::conf(2022).☆11Jul 27, 2022Updated 4 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- ☆21Oct 22, 2024Updated last year
- 这里提供了一个yaml可以通过conda来快速无痛一键安装ESMfold，算是已经踩过所有通过官方安装遇到的暗坑了。☆20Jan 31, 2024Updated 2 years ago
- Predicting biosynthetic gene clusters in genomes☆42Nov 26, 2013Updated 12 years ago
- Python package of codon usage bias analysis tools☆22May 16, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…☆24Apr 25, 2021Updated 5 years ago
- ☆11Feb 21, 2020Updated 6 years ago
- DeepSoluE☆18Sep 18, 2023Updated 2 years ago
- Reference-free analysis of genetic architecture☆23Sep 21, 2024Updated last year
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- ☆19Mar 31, 2026Updated 4 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆14Aug 10, 2026Updated 2 weeks ago