Masked language models of biosynthetic gene clusters
☆18Jul 27, 2022Updated 4 years ago
Alternatives and similar repositories for bigcarp
Users that are interested in bigcarp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Dec 10, 2024Updated last year
- BGC Detection and Classification Using Deep Learning☆161Nov 11, 2023Updated 2 years ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆32Jan 9, 2026Updated 9 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆32Jul 21, 2026Updated 2 months ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- tree-aggregated compositional analysis for high-throughput sequencing data☆12Aug 24, 2022Updated 4 years ago
- incremental symbol learning for natural language understanding☆10Jun 12, 2023Updated 3 years ago
- ☆20Sep 16, 2026Updated 3 weeks ago
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆23Jul 27, 2026Updated 2 months ago
- ☆15Apr 17, 2025Updated last year
- Python Implementation of Codon Adaption Index☆38Feb 1, 2023Updated 3 years ago
- A biological dual-language foundation model☆11Jun 16, 2025Updated last year
- ☆19Nov 26, 2020Updated 5 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆261Jul 31, 2024Updated 2 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆12Oct 7, 2019Updated 7 years ago
- QLoRA for Masked Language Modeling☆23Sep 11, 2023Updated 3 years ago
- ☆16Aug 22, 2022Updated 4 years ago
- ☆13Aug 18, 2023Updated 3 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 11 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆52Dec 16, 2024Updated last year
- An R package for visualizing confounder control in meta-analyses☆11Jan 17, 2023Updated 3 years ago
- This repository contains reference data from the Richardson Lab at Duke.☆18Sep 22, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- The Biosynthetic Gene cluster Meta’omics abundance Profiler (BiG-MAP). A command-line tool that is able to profile the abundance and expr…☆35Jan 27, 2026Updated 8 months ago
- Template course website for the Designing a Data Science Classroom workshop at rstudio::conf(2022).☆11Jul 27, 2022Updated 4 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 6 months ago
- ☆21Oct 22, 2024Updated last year
- 这里提供了一个yaml可以通过conda来快速无痛一键安装ESMfold，算是已经踩过所有通过官方安装遇到的暗坑了。☆20Jan 31, 2024Updated 2 years ago
- Predicting biosynthetic gene clusters in genomes☆42Nov 26, 2013Updated 12 years ago
- Python package of codon usage bias analysis tools☆22May 16, 2026Updated 4 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…☆24Apr 25, 2021Updated 5 years ago
- DeepECtransformer☆33Oct 20, 2023Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Jun 13, 2026Updated 3 months ago
- ☆11Feb 21, 2020Updated 6 years ago
- DeepSoluE☆18Sep 18, 2023Updated 3 years ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- ☆19Mar 31, 2026Updated 6 months ago