yesimon / metax_bakeoff_2019Links
☆17Updated 6 years ago
Alternatives and similar repositories for metax_bakeoff_2019
Users that are interested in metax_bakeoff_2019 are comparing it to the libraries listed below
Sorting:
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- A reference viral database (RVDB)☆26Updated 7 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆32Updated 8 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated this week
- ☆23Updated 6 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- Protein Alignment and Detection Interface☆60Updated last year
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆45Updated this week
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- ☆29Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- ☆25Updated 4 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Python bindings for the TaxonKit library☆41Updated last month
- A repository for the lessons and notebooks used for Binder tutorials☆15Updated 5 years ago