Alternatives and similar repositories for metax_bakeoff_2019:

Users that are interested in metax_bakeoff_2019 are comparing it to the libraries listed below

• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆28Updated last month
• eclarke / komplexity
  A method of assessing sequence complexity based on kmer frequencies
  ☆31Updated 6 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆47Updated 2 years ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 3 years ago
• ArifaKhanLab / RVDB
  A reference viral database (RVDB)
  ☆26Updated 6 years ago
• emepyc / Blast2lca
  Calculates the lowest common ancestors of each query sequence in a Blast result
  ☆31Updated 7 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• fanglab / mbin
  mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
  ☆25Updated 2 years ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• zjshi / snv_analysis_almeida2019
  ☆22Updated 5 years ago
• pirovc / metameta
  ☆23Updated 5 years ago
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆17Updated 3 years ago
• taxprofiler / taxpasta
  TAXnomic Profile Aggregation and STAndardisation
  ☆35Updated 4 months ago
• chanzuckerberg / czid-dedup
  deduplicate FASTA and FASTQ files
  ☆19Updated 3 years ago
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆41Updated 4 years ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆28Updated last month
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated 3 months ago
• cssmillie / StrainFinder
  StrainFinder
  ☆26Updated 6 years ago
• angelovangel / nxf-kraken2
  A simple nextflow pipeline for running kraken2 and bracken in a docker container
  ☆20Updated 3 years ago
• segalab / SGVFinder
  ☆32Updated last year
• broadinstitute / GATK-for-Microbes
  ☆25Updated 3 years ago
• sanger-pathogens / seroba
  k-mer based Pipeline to identify the Serotype from Illumina NGS reads
  ☆21Updated last year
• LANL-Bioinformatics / GOTTCHA
  Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:
  ☆23Updated 6 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• drpowell / FriPan
  Interactive, web tool for exploring pan-genome of bacterial strains
  ☆45Updated 2 years ago
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 5 years ago
• zifanzhu / MicroPro
  A microbial profiling framework for metagenomic analysis
  ☆24Updated 4 years ago
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• HKU-BAL / MegaPath-Nano
  MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…
  ☆14Updated 2 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago