yesimon / metax_bakeoff_2019View external linksLinks
☆17Sep 20, 2019Updated 6 years ago
Alternatives and similar repositories for metax_bakeoff_2019
Users that are interested in metax_bakeoff_2019 are comparing it to the libraries listed below
Sorting:
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 2 months ago
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 4 months ago
- ☆12Feb 22, 2022Updated 3 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Nov 13, 2025Updated 3 months ago
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated last year
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- ☆19Nov 26, 2020Updated 5 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Feb 9, 2026Updated last week
- ☆28Jan 6, 2026Updated last month
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆103Feb 5, 2026Updated last week
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Jul 9, 2024Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Feb 7, 2026Updated last week
- A reference viral database (RVDB)☆26Nov 30, 2018Updated 7 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Sep 12, 2023Updated 2 years ago
- ☆23Sep 27, 2019Updated 6 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Jan 6, 2026Updated last month
- Split Kmer Analysis☆66May 26, 2022Updated 3 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Jan 10, 2022Updated 4 years ago
- ☆29Jun 12, 2024Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆131Updated this week
- Utilities to create and analyze gVCF files☆38Mar 21, 2017Updated 8 years ago
- ☆34Sep 5, 2024Updated last year
- An R package to analyze single-cell V(D)J data☆28Nov 13, 2023Updated 2 years ago
- ☆43Apr 20, 2016Updated 9 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆32Aug 23, 2022Updated 3 years ago
- Benchmarking pairwise aligners☆36Feb 8, 2025Updated last year
- ☆10Sep 27, 2023Updated 2 years ago
- Python SDK and examples for the RSpace API☆17Oct 29, 2025Updated 3 months ago
- ☆10Dec 29, 2021Updated 4 years ago
- RILseq computational protocol☆10Apr 3, 2022Updated 3 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆39May 30, 2025Updated 8 months ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 3 weeks ago
- my PhD thesis☆36Jul 10, 2019Updated 6 years ago
- ☆12Feb 15, 2023Updated 3 years ago