yesimon / metax_bakeoff_2019Links
☆17Updated 6 years ago
Alternatives and similar repositories for metax_bakeoff_2019
Users that are interested in metax_bakeoff_2019 are comparing it to the libraries listed below
Sorting:
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- deduplicate FASTA and FASTQ files☆22Updated 3 years ago
- ☆29Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆79Updated 3 weeks ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- ☆23Updated 6 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 8 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆45Updated last week
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 8 months ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- ☆49Updated 10 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Python3 module for running MUMmer and reading the output☆33Updated 6 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆41Updated last month
- Fully automated generation of UCSC assembly hubs☆34Updated 11 months ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆58Updated 6 years ago