☆16Sep 20, 2019Updated 7 years ago
Alternatives and similar repositories for metax_bakeoff_2019
Users that are interested in metax_bakeoff_2019 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Feb 16, 2021Updated 5 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆32Apr 14, 2026Updated 6 months ago
- Automated pipeline for amplicon sequence analysis☆10Nov 25, 2025Updated 10 months ago
- Python package for common tasks in bioinformatic.☆11Sep 24, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Feb 22, 2022Updated 4 years ago
- ☆29Jun 12, 2024Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- ☆19Nov 26, 2020Updated 5 years ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Jan 22, 2024Updated 2 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆15Jun 9, 2026Updated 4 months ago
- Split Kmer Analysis☆67May 26, 2022Updated 4 years ago
- Scripts and reference files to type Group A Streptococcus☆11Aug 31, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Microbial marker identification from cross-cohort datasets☆15May 15, 2024Updated 2 years ago
- ☆14Aug 3, 2022Updated 4 years ago
- Portable WDL workflows for IDseq production pipelines☆32Jan 19, 2022Updated 4 years ago
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 5 years ago
- Critical downstream analysis steps for single-cell RNA sequencing data☆13Feb 21, 2021Updated 5 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆59Jul 9, 2024Updated 2 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- QC cutoffs for different genomes.☆19May 28, 2026Updated 4 months ago
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆31Sep 12, 2023Updated 3 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Jan 10, 2022Updated 4 years ago
- ☆31Jan 6, 2026Updated 9 months ago
- Neptune: Genomic Signature Discovery☆22May 1, 2026Updated 5 months ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Phage prediction tools☆15Aug 1, 2023Updated 3 years ago
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Sep 11, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A repository on resources about Mendelian Randomization☆10Jul 9, 2018Updated 8 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 4, 2026Updated 5 months ago
- my PhD thesis☆36Jul 10, 2019Updated 7 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Oct 5, 2026Updated last week
- A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)☆17Apr 9, 2024Updated 2 years ago
- ☆22Sep 27, 2019Updated 7 years ago
- A DRAFT, early stage book on snakemake.☆25Nov 1, 2023Updated 2 years ago