MetaCompare
☆20Mar 3, 2024Updated 2 years ago
Alternatives and similar repositories for MetaCompare
Users that are interested in MetaCompare are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆39Updated this week
- ☆15Apr 3, 2025Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Feb 17, 2021Updated 5 years ago
- ☆64Dec 30, 2020Updated 5 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆55Aug 16, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ARGpore2☆13Sep 12, 2024Updated 2 years ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23May 16, 2026Updated 4 months ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆75Aug 28, 2026Updated 3 weeks ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆58Updated this week
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 9 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Oct 6, 2020Updated 5 years ago
- code repo for mobileOG-db☆51Jul 30, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 2 months ago
- ☆24Apr 13, 2026Updated 5 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆39Jul 12, 2022Updated 4 years ago
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 7 years ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Updated this week
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. car — Companion to Applied Regression. Homepage: https://github.com/bprice…☆10Feb 3, 2026Updated 7 months ago
- ☆17May 22, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- SourceTracker2☆92Jul 10, 2024Updated 2 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- Source code for the crAssphage project☆51Nov 11, 2025Updated 10 months ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆15May 7, 2022Updated 4 years ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 8 years ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated last year
- creating reference databases for amplicon sequencing☆52Jan 13, 2026Updated 8 months ago
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 8 months ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- ☆13Sep 4, 2026Updated 2 weeks ago