minoh0201 / MetaCompareLinks
MetaCompare
☆19Updated last year
Alternatives and similar repositories for MetaCompare
Users that are interested in MetaCompare are comparing it to the libraries listed below
Sorting:
- ☆51Updated 4 years ago
- ☆54Updated 5 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆51Updated 4 years ago
- code repo for mobileOG-db☆41Updated last month
- Horizontal gene transfer (HGT) identification pipeline☆64Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆36Updated 3 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- ☆35Updated last month
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆64Updated 3 years ago
- ☆43Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 4 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆45Updated last week
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆49Updated last year
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 4 months ago
- ☆50Updated this week
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 3 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆82Updated 11 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated this week
- Linking MAGs with 16S rRNA marker genes☆27Updated 10 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- ☆74Updated last week