Snakemake workflow for comparison of differential abundance ranks
☆13Mar 22, 2024Updated 2 years ago
Alternatives and similar repositories for qadabra
Users that are interested in qadabra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated 7 months ago
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 2 years ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆25Dec 19, 2023Updated 2 years ago
- ☆19Nov 26, 2020Updated 5 years ago
- tree-aggregated compositional analysis for high-throughput sequencing data☆10Aug 24, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A microbiome analysis toolkit for R☆25Aug 21, 2023Updated 2 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- Categorical Variational Autoencoders☆24Feb 4, 2022Updated 4 years ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Feb 26, 2025Updated last year
- Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs☆18Jan 21, 2024Updated 2 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Flexible omics pipeline☆17Oct 16, 2025Updated 5 months ago
- ☆12Oct 28, 2021Updated 4 years ago
- Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies☆11May 12, 2025Updated 10 months ago
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualiz…☆27Mar 8, 2026Updated 3 weeks ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- a tool for annotation of immunoglobulin genes in genome assemblies☆14Sep 22, 2025Updated 6 months ago
- Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.☆14Jan 11, 2023Updated 3 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package to predict microbial loads☆17Updated this week
- ☆22Nov 6, 2020Updated 5 years ago
- ☆21Mar 19, 2025Updated last year
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆83Dec 3, 2025Updated 3 months ago
- A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations☆13Nov 30, 2023Updated 2 years ago
- Javascript library to rapidly annotate paragraphs of text on websites with the goal of making the annotation process as fast and simple a…☆31Feb 21, 2017Updated 9 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- Semi-Automatic Taxonomy Improvement and Validation Algorithm☆20Jan 8, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R functions to detect play jar eye sores☆15Jun 24, 2019Updated 6 years ago
- Implementation of Krona to QIIME2☆16Mar 14, 2024Updated 2 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- A package for creating and managing sample identifiers in comparative -omics datasets.☆23Jan 30, 2017Updated 9 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 7 years ago
- A QIIME 2 plugin for interaction with the Greengenes2 database☆33Oct 1, 2024Updated last year