Alternatives and similar repositories for ABIS

Users that are interested in ABIS are comparing it to the libraries listed below

• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆76Updated 2 years ago
• sjczheng / EpiDISH
  This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…
  ☆53Updated 6 months ago
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆54Updated 7 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago
• elimereu / matchSCore2
  ☆56Updated 5 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆96Updated 5 years ago
• Teichlab / cellity
  ☆38Updated 9 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆61Updated 5 years ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆46Updated 4 years ago
• ebecht / MCPcounter
  ☆59Updated 3 years ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• McGranahanLab / TcellExTRECT
  ☆48Updated last year
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• icbi-lab / Immunophenogram
  ☆41Updated 7 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆48Updated 2 years ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆60Updated 3 months ago
• bowmanr / scDNA_myeloid
  Processing scripts for single cell DNA sequencing on the Tapestri platform
  ☆24Updated 2 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆67Updated 3 months ago
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆39Updated 2 years ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆87Updated 2 months ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆81Updated 7 months ago
• lhe17 / nebula
  ☆48Updated 2 months ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆93Updated last year
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆27Updated 3 years ago
• fpbarthel / GLASS
  GLASS consortium
  ☆42Updated 5 years ago
• krasnowlab / HLCA
  ☆62Updated 4 years ago
• cssmillie / ulcerative_colitis
  ☆64Updated 5 years ago
• JEFworks / MUDAN
  Multi-sample Unified Discriminant ANalysis
  ☆75Updated 2 years ago