giannimonaco / ABISLinks
☆59Updated 5 years ago
Alternatives and similar repositories for ABIS
Users that are interested in ABIS are comparing it to the libraries listed below
Sorting:
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Mouse cell atlas☆61Updated 5 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆52Updated 7 years ago
- ☆47Updated 10 months ago
- ☆30Updated 7 years ago
- ☆59Updated 3 years ago
- GLASS consortium☆42Updated 5 years ago
- ☆47Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- ☆55Updated 4 years ago
- Normalize CITEseq Data☆66Updated 2 weeks ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 3 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆41Updated 7 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 5 months ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- ☆74Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- ☆63Updated 5 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated 3 weeks ago