☆59Apr 28, 2020Updated 5 years ago
Alternatives and similar repositories for ABIS
Users that are interested in ABIS are comparing it to the libraries listed below
Sorting:
- Dichotomous of innate immune landscape☆17Aug 31, 2019Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Feb 27, 2023Updated 3 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆521Jan 5, 2026Updated last month
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- ☆60Jun 21, 2022Updated 3 years ago
- ☆38Jul 26, 2016Updated 9 years ago
- Geometry-preserving random sampling☆96Oct 29, 2024Updated last year
- Cell types enrichment analysis☆206May 27, 2024Updated last year
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Nov 13, 2025Updated 3 months ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Jan 9, 2021Updated 5 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆211Jan 9, 2023Updated 3 years ago
- ☆16Jun 17, 2021Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Nov 17, 2025Updated 3 months ago
- LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network☆13Feb 15, 2022Updated 4 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. Please download the R package from the RaceID3…☆15Dec 7, 2018Updated 7 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 10 years ago
- Inferring CNV from Single-Cell RNA-Seq☆653Nov 14, 2025Updated 3 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 8 months ago
- Absolve antibody variable domain sequence analysis☆18Sep 13, 2018Updated 7 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Feb 8, 2023Updated 3 years ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆338Nov 18, 2025Updated 3 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Apr 22, 2019Updated 6 years ago
- ☆19Jul 6, 2023Updated 2 years ago
- Immunology-related bioinformatics data and tools☆76Apr 30, 2024Updated last year
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Feb 7, 2019Updated 7 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Nov 27, 2017Updated 8 years ago
- A clusterability measure for scRNA-seq data.☆18Feb 2, 2022Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19May 24, 2021Updated 4 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆323Jul 28, 2020Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- ☆20Mar 28, 2017Updated 8 years ago
- The source code of web server TIP, including example data.☆21Mar 28, 2019Updated 6 years ago