Alternatives and similar repositories for Platinum-Pedigree-Datasets

Users that are interested in Platinum-Pedigree-Datasets are comparing it to the libraries listed below

• kcleal / SV_Benchmark_CMRG_GIAB
  Structural variant benchmark
  ☆18Updated 3 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 6 months ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated 10 months ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆25Updated 2 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆43Updated 2 weeks ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆27Updated 8 months ago
• ChaissonLab / vamos
  VNTR annotation using motif selection
  ☆35Updated 2 weeks ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆28Updated 3 weeks ago
• PacificBiosciences / TRexs
  TRGT Repeat expansion summary
  ☆10Updated 2 years ago
• PacificBiosciences / HiFi-somatic-WDL
  Tumor-normal variant calling workflow using HiFi reads
  ☆20Updated last month
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 4 months ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• hitbc / gcSV
  ☆21Updated 4 months ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆54Updated 3 years ago
• vgteam / vg_wdl
  Workflow Description Language (WDL) scripts for common vg workflows
  ☆20Updated last month
• Sentieon / hap-eval
  A VCF comparison engine for structual variant benchmarking
  ☆24Updated last year
• mchowdh200 / samplot-ml
  ☆22Updated 4 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• PacificBiosciences / pbfusion
  ☆22Updated last month
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 4 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆18Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆35Updated last week
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 11 months ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆31Updated this week
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆49Updated 5 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 3 months ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆56Updated last year
• cschin / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆14Updated 3 months ago
• CASTLE-Panel / castle
  CAncer Standards Long-read Evaluation
  ☆28Updated 4 months ago