As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.
☆12Jul 30, 2020Updated 6 years ago
Alternatives and similar repositories for covid19_sequencing
Users that are interested in covid19_sequencing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- Research pipeline for exploring clinically relevant genomic variants☆18Jul 20, 2026Updated 2 months ago
- Covid-19 HGI WES/WGS burden test BQC-19 pipeline☆16May 26, 2022Updated 4 years ago
- Pathogenicity prediction and prioritization of genetic variants.☆20Sep 21, 2026Updated 3 weeks ago
- TAPES : a Tool for Assessment and Prioritisation in Exome Studies☆27Jun 22, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- TOPMed analysis pipeline☆52Oct 10, 2023Updated 3 years ago
- Regional association plots☆25Apr 1, 2024Updated 2 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆18Jun 29, 2026Updated 3 months ago
- MOsaic CHromosomal Alterations (MoChA) caller☆94Aug 22, 2025Updated last year
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- ☆10Jul 2, 2024Updated 2 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Aug 3, 2018Updated 8 years ago
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated this week
- Exome Copy Number Variation Polisher via Deep Learning☆18Jun 1, 2020Updated 6 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆67Oct 22, 2025Updated 11 months ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Mar 20, 2023Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 10 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆12Nov 25, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Gene Exploration System for Variance☆22Dec 8, 2022Updated 3 years ago
- ☆22Jun 12, 2023Updated 3 years ago
- ☆35Feb 16, 2023Updated 3 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- ☆19Mar 14, 2022Updated 4 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated 8 months ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆12Sep 15, 2026Updated last month
- Data Science Toolkit☆10Feb 19, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- zsh completion for Rancher CLI☆10Apr 12, 2017Updated 9 years ago
- Variant catalogue pipeline☆26Jan 30, 2026Updated 8 months ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- An R package to create a pretty Copy Number Variant plot from a segments file☆11Feb 25, 2025Updated last year
- ☆13Jun 17, 2021Updated 5 years ago
- Python introduction for the PyBrain workshop at the MRC Cognition and Brain Sciences Unit☆12Nov 3, 2020Updated 5 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago