covid19-hg / covid19_sequencingLinks
As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.
☆12Updated 5 years ago
Alternatives and similar repositories for covid19_sequencing
Users that are interested in covid19_sequencing are comparing it to the libraries listed below
Sorting:
- Aggregation and analyses of rare CNVs across diseases☆15Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- ☆15Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 3 years ago
- ☆11Updated 7 years ago
- ☆23Updated 5 months ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- ☆24Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Allele-specific copy number estimation with whole genome sequencing☆23Updated 2 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- ☆11Updated 3 months ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Updated 3 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated last year
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- ☆24Updated last year
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated last year
- PopSTR - A Population based microsatellite genotyper☆32Updated 2 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆40Updated 4 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆23Updated last month