covid19-hg / covid19_sequencingLinks
As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.
☆12Updated 5 years ago
Alternatives and similar repositories for covid19_sequencing
Users that are interested in covid19_sequencing are comparing it to the libraries listed below
Sorting:
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- ☆15Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- ☆11Updated last month
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- ☆22Updated 3 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- ☆23Updated 11 months ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- ☆22Updated 9 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated last month
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago
- ☆24Updated 11 months ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆35Updated 4 months ago
- Allele-specific copy number estimation with whole genome sequencing☆23Updated 2 years ago