Alternatives and similar repositories for WGA-LP

Users that are interested in WGA-LP are comparing it to the libraries listed below

• moshi4 / plot_genome_align_fig
  Plot genome alignment figure using progressiveMauve & genoPlotR
  ☆22Updated 3 years ago
• christophertbrown / bioscripts
  some useful scripts for working with genomics and sequencing data
  ☆17Updated 6 years ago
• yosuken / ccfind
  ccfind - circular complete genome finder with clues of terminal redundancy
  ☆16Updated 5 years ago
• rrwick / Compare-annotations
  A script for comparing old vs new versions of genome annotations
  ☆22Updated 2 years ago
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• maxemil / PhyloMagnet
  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
  ☆11Updated 5 years ago
• adamd3 / BactSeq
  A nextflow pipeline for performing bacterial RNA-Seq data analysis.
  ☆12Updated 3 months ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 7 years ago
• Xiangyang1984 / Gcluster
  A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes
  ☆18Updated last month
• BioSina / Panakeia
  Prokaryotic Pangenome Analysis
  ☆24Updated 4 years ago
• josephpetrone / RESCUE
  Resolving Species Level Classification Using Emu
  ☆14Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• phac-nml / neptune
  Neptune: Genomic Signature Discovery
  ☆21Updated last year
• cidgoh / bacpaq
  Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data
  ☆12Updated last month
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…
  ☆22Updated 3 months ago
• thh32 / Protologger
  Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights
  ☆16Updated 2 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated 2 months ago
• aweimann / traitar
  ☆22Updated 2 years ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• klebgenomics / Kleborate-viz
  Visualisation application for Klebsiella genotypes generated by Kleborate.
  ☆10Updated 4 months ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• songweizhi / BioSAK
  A Swiss-Army-Knife for Bioinformaticians
  ☆14Updated 3 weeks ago
• davised / get_assemblies
  Download assembly files from NCBI
  ☆13Updated 2 years ago
• amromics / panta
  Pan-genome Analysis
  ☆12Updated 8 months ago
• maurijlozano / ISCompare
  ISCompare, an opensource program to identify Differentially Located Insertion Sequences
  ☆14Updated last year
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆27Updated 2 months ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆26Updated last year
• balabanmetin / uDance
  ☆43Updated last year
• laxeye / zga
  ZGA prokaryotic genome assembly and annotation pipeline
  ☆13Updated last year