Gibbons-Lab / isb_course_2021Links
Materials and presentations for the 2021 ISB Virtual Microbiome Series.
☆26Updated 2 years ago
Alternatives and similar repositories for isb_course_2021
Users that are interested in isb_course_2021 are comparing it to the libraries listed below
Sorting:
- Assessing the quality of metagenome-derived genome bins using machine learning☆236Updated 8 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆46Updated 3 months ago
- This repo collects the list of podcasts related to microbiome science: science, microbiology and bioinformatics.☆30Updated 2 months ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆16Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆162Updated 7 months ago
- This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.☆62Updated this week
- ☆149Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- BSR-Based Allele Calling Algorithm☆148Updated last week
- Make Picrust2 Output Analysis and Visualization Easier☆169Updated last week
- DAS Tool☆162Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆207Updated 2 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆87Updated 4 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆208Updated 9 months ago
- A user-friendly workflow for phylogenomics☆222Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆334Updated 2 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated last month
- fast phage annotation program☆184Updated last week
- geNomad: Identification of mobile genetic elements☆270Updated last week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- ☆50Updated 4 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆165Updated 2 months ago
- Pan-genome wide association studies☆205Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆240Updated 2 years ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆49Updated last month
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago