Gibbons-Lab / isb_course_2021
Materials and presentations for the 2021 ISB Virtual Microbiome Series.
☆25Updated 2 years ago
Alternatives and similar repositories for isb_course_2021:
Users that are interested in isb_course_2021 are comparing it to the libraries listed below
- Assessing the quality of metagenome-derived genome bins using machine learning☆204Updated last month
- Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes☆13Updated 9 months ago
- Make Picrust2 Output Analysis and Visualization Easier☆128Updated this week
- ☆131Updated 10 months ago
- Metatranscriptomics Tutorial☆62Updated last year
- 🍄 Qiime2 ITS classifiers for the UNITE database☆37Updated last month
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆154Updated 2 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆75Updated 2 months ago
- fast phage annotation program☆161Updated 3 months ago
- A short tutorial for Tax4Fun2☆17Updated 8 months ago
- ☆59Updated 5 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆72Updated 2 years ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆53Updated last month
- ☆48Updated 4 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆142Updated last week
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆80Updated 2 weeks ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆93Updated 2 weeks ago
- BSR-Based Allele Calling Algorithm☆142Updated last week
- Bioinformatics Tools☆87Updated 3 weeks ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆59Updated 4 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆133Updated last year
- DAS Tool☆147Updated 11 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆153Updated 11 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆29Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆123Updated last week
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆30Updated 9 months ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆113Updated 2 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆87Updated 9 months ago