Analysis of Microbial Growth Assays
☆18Mar 12, 2025Updated last year
Alternatives and similar repositories for amiga
Users that are interested in amiga are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minimal Supplying Community Search with constraint-based optimization methods.☆16Jun 17, 2026Updated last month
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 3 years ago
- ☆10Jul 4, 2019Updated 7 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- wrangling and model-free analysis of microbial growth curve data in R with gcplyr☆39May 8, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scanomatic☆11Oct 12, 2023Updated 2 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- Python interface for running COMETS simulations and analyzing the results☆16May 19, 2026Updated 2 months ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Tool for estimating growth rates from microbial growth curves☆32Feb 4, 2026Updated 5 months ago
- Python package to study microbial communities using metabolic modeling.☆134Jul 20, 2026Updated last week
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆14Feb 24, 2025Updated last year
- gutSMASH☆60Oct 3, 2025Updated 9 months ago
- Community detection method for multidimensional networks☆11Mar 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tutorial for the free Inkscape cross-platform vector graphics editor.☆13Oct 4, 2016Updated 9 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆15Jan 8, 2024Updated 2 years ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Apr 22, 2026Updated 3 months ago
- ☆16Apr 11, 2026Updated 3 months ago
- Scripts written to demo R for Biochemists☆10Jan 12, 2026Updated 6 months ago
- NGSeminar on the use of Jupyter and R notebooks in biomedical research☆13Jan 28, 2023Updated 3 years ago
- Text Wrapping around Figures in Quarto☆11Dec 27, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- collection of errors in R as well as explanations☆15Jun 8, 2021Updated 5 years ago
- Demo to show how to reuse a document using different metadata.☆12Mar 15, 2025Updated last year
- ☆14Mar 26, 2026Updated 4 months ago
- RT2 Lab website, built with Jekyll.☆15Apr 12, 2023Updated 3 years ago
- Mostly useful scripts and files for processing MiSeq amplicon data☆18Jul 1, 2016Updated 10 years ago
- QSLib is a package for interacting with Applied Biosystems' QuantStudio qPCR machines, intended for non-qPCR uses, such as DNA computing …☆15Updated this week
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆30Feb 17, 2023Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆70Mar 16, 2026Updated 4 months ago
- A Julia package for estimating phylogenetic networks from genomic data☆20Jun 3, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Haploidy and Size Completeness Estimation☆14Apr 11, 2024Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Jul 16, 2026Updated last week
- Standard reaction Gibbs energy estimation for biochemical reactions☆19Dec 10, 2018Updated 7 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- Simple bacterial assembly and annotation pipeline☆92Updated this week
- Support and bug tracker for R-universe☆11Oct 24, 2024Updated last year
- Mackinac: A bridge between ModelSEED and COBRApy☆19Aug 20, 2018Updated 7 years ago