pbuttigieg / masame
Code to run the shiny functions for the MASAME suite
☆28Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for masame
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Microbial community analysis tools in R☆20Updated 2 years ago
- diversity estimation under ecological networks☆83Updated last year
- Species richness with high diversity☆68Updated 11 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆29Updated last year
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last year
- Miscellaneous functions for metagenomic analysis.☆46Updated 5 months ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆18Updated 5 years ago
- R Interfaces to Phylogenetic Software☆11Updated 6 months ago
- A synthesis of bacterial and archaeal phenotypic trait data☆31Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆35Updated 8 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 5 years ago
- Speedy versions of phyloseq functions☆46Updated 7 months ago
- functions for analyzing phyloseq data☆26Updated 3 months ago
- A comprehensive and customizable R package for microbiome analysis.☆21Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆31Updated 7 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆20Updated 4 years ago
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 4 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆25Updated 5 years ago
- Phylogenetic ANalyses of DiversificAtion☆24Updated 4 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- ☆20Updated last year
- Look Up Guild Information for Fungi in R☆18Updated last year
- An Introductory Undergraduate course in Bioinformatics☆45Updated 3 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆15Updated last year
- Repo for a Microbiome Protocol☆9Updated 6 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week