pbuttigieg / masameLinks
Code to run the shiny functions for the MASAME suite
☆28Updated 5 years ago
Alternatives and similar repositories for masame
Users that are interested in masame are comparing it to the libraries listed below
Sorting:
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆34Updated 6 years ago
- diversity estimation under ecological networks☆83Updated 3 months ago
- Species richness with high diversity☆67Updated 3 months ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- Tools for visualising microbial community amplicon data☆70Updated 2 weeks ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 weeks ago
- ☆43Updated 8 years ago
- Miscellaneous functions for metagenomic analysis.☆51Updated last week
- Speedy versions of phyloseq functions☆48Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 9 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆71Updated 2 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- functions for analyzing phyloseq data☆28Updated 9 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 3 weeks ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 6 months ago
- Simple R utilities for working with HMMER☆19Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 months ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 3 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- initial commit☆26Updated 2 years ago
- Pairwise multilevel comparison using adonis☆79Updated 2 years ago