Code to run the shiny functions for the MASAME suite
☆28Feb 4, 2020Updated 6 years ago
Alternatives and similar repositories for masame
Users that are interested in masame are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆51Mar 6, 2024Updated 2 years ago
- ggplot-based plots for vegan☆126May 22, 2026Updated 3 months ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 3 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆14Apr 4, 2023Updated 3 years ago
- A spatially explicit trait- and individual-based microbial systems modelling framework☆16Updated this week
- estimate trophic position using stable isotope data☆19Jun 26, 2024Updated 2 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 7 months ago
- Tutorial for the 2018 PolNet Workshop, "Introduction to Network Analysis Using R". To follow along with the workshop, clone or download, …☆11Jun 5, 2018Updated 8 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated 2 years ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- A gallery of mainly Jupyter Notebooks but also more, dedicated to Copernicus Marine Service (CMEMS).☆14Aug 6, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆24Nov 9, 2017Updated 8 years ago
- Slides and code for the Stable Isotope Mixing Models course given by Andrew Parnell and Andrew Jackson☆31Apr 30, 2026Updated 4 months ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Mar 9, 2020Updated 6 years ago
- R package for community ecologists: popular ordination methods, ecological null models & diversity analysis☆540Updated this week
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 11 months ago
- This repository contains the generalized scripts necessary to perform the ecological analyses detailed within the manuscript titled, "Uni…☆19Nov 2, 2020Updated 5 years ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆52Jun 6, 2026Updated 2 months ago
- This is a read-only mirror of the CRAN R package repository. BiodiversityR — Package for Community Ecology and Suitability Analysis. Ho…☆19Jul 30, 2026Updated last month
- Example code from metagenomics book (https://www.gitbook.com/book/kyclark/metagenomics/details)☆18Feb 1, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Rarefaction scripts☆18Jan 30, 2026Updated 7 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Speedy versions of phyloseq functions☆49Apr 21, 2024Updated 2 years ago
- Scripts and libraries for Environmental Genomics☆38Jul 13, 2026Updated last month
- ☆12Jan 27, 2023Updated 3 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆40Jul 6, 2026Updated last month
- Web-based Workflow for Metabolomics and Proteomics Data Analysis☆19Mar 25, 2026Updated 5 months ago
- Twitter sentiment analysis part 9: Neural Networks with Doc2Vec, Word2Vec, GloVe☆13Feb 27, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Aug 19, 2026Updated 2 weeks ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 6 years ago
- A tool to infer TF regulators for gene modules.☆11May 11, 2021Updated 5 years ago
- ☆24Mar 2, 2019Updated 7 years ago
- Code repository of the Earth Microbiome Project.☆168Dec 13, 2022Updated 3 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆15Jul 20, 2023Updated 3 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆24Mar 3, 2026Updated 6 months ago