Code to run the shiny functions for the MASAME suite
☆28Feb 4, 2020Updated 6 years ago
Alternatives and similar repositories for masame
Users that are interested in masame are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Mar 6, 2024Updated 2 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- ☆14Apr 4, 2023Updated 2 years ago
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 2 years ago
- A spatially explicit trait- and individual-based microbial systems modelling framework☆14Jan 29, 2026Updated last month
- estimate trophic position using stable isotope data☆19Jun 26, 2024Updated last year
- Tutorial for the 2018 PolNet Workshop, "Introduction to Network Analysis Using R". To follow along with the workshop, clone or download, …☆11Jun 5, 2018Updated 7 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- A data analysis web-app written in R Shiny.☆22May 6, 2019Updated 6 years ago
- Sketch phylogenetic trees and networks☆24Feb 5, 2026Updated last month
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Mar 9, 2020Updated 6 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 2 months ago
- R package for community ecologists: popular ordination methods, ecological null models & diversity analysis☆522Updated this week
- Slides and code for the Stable Isotope Mixing Models course given by Andrew Parnell and Andrew Jackson☆29Mar 28, 2025Updated 11 months ago
- Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat☆47Feb 3, 2026Updated last month
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- Build similarity network from items with associated tags (for example documents with keywords)☆16Feb 16, 2023Updated 3 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Fit phenomenological sigmoid and impulse curves with priors to improve interpretability☆10May 29, 2024Updated last year
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated last year
- This repository contains the generalized scripts necessary to perform the ecological analyses detailed within the manuscript titled, "Uni…☆17Nov 2, 2020Updated 5 years ago
- This is a read-only mirror of the CRAN R package repository. BiodiversityR — Package for Community Ecology and Suitability Analysis. Ho…☆18Oct 29, 2025Updated 4 months ago
- Twitter sentiment analysis part 9: Neural Networks with Doc2Vec, Word2Vec, GloVe☆13Feb 27, 2018Updated 8 years ago
- Rarefaction scripts☆17Jan 30, 2026Updated last month
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated this week
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- A tool to infer TF regulators for gene modules.☆10May 11, 2021Updated 4 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Mar 3, 2026Updated 3 weeks ago
- ☆23Mar 2, 2019Updated 7 years ago
- Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis☆18May 3, 2023Updated 2 years ago
- Code repository of the Earth Microbiome Project.☆163Dec 13, 2022Updated 3 years ago
- ☆14Apr 30, 2020Updated 5 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆15Jul 20, 2023Updated 2 years ago
- ☆20Oct 27, 2023Updated 2 years ago
- Fast gradient-based optimization of resistance surfaces☆15Jul 9, 2020Updated 5 years ago
- An R framework for phylostratigraphy☆35Aug 12, 2025Updated 7 months ago