pbuttigieg / masameLinks
Code to run the shiny functions for the MASAME suite
☆28Updated 5 years ago
Alternatives and similar repositories for masame
Users that are interested in masame are comparing it to the libraries listed below
Sorting:
- diversity estimation under ecological networks☆83Updated 5 months ago
- Species richness with high diversity☆68Updated 5 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 6 years ago
- Miscellaneous functions for metagenomic analysis.☆53Updated last month
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Tools for visualising microbial community amplicon data☆71Updated 2 months ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 4 years ago
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 months ago
- ☆43Updated 8 years ago
- Pairwise multilevel comparison using adonis☆80Updated 2 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 2 weeks ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 6 years ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆72Updated 4 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 6 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- functions for analyzing phyloseq data☆28Updated 11 months ago
- R We There Yet?☆32Updated 10 months ago
- Simple R utilities for working with HMMER☆19Updated last year
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Updated 6 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆30Updated 8 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆17Updated 2 years ago
- accessory functions for processing microbial community data☆12Updated 3 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 4 years ago
- An open database of vertebrate-virus interactions☆40Updated last month