jgust1 / needLRLinks
A structural variant filtering and prioritization tool for long-read sequencing data
☆20Updated last month
Alternatives and similar repositories for needLR
Users that are interested in needLR are comparing it to the libraries listed below
Sorting:
- ☆39Updated last year
- Structural Variant Index☆74Updated 5 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 5 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 9 months ago
- ☆40Updated 8 months ago
- ☆22Updated 4 years ago
- ☆80Updated 3 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Variant annotation and merging pipeline☆34Updated last week
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- ☆28Updated last month
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- Human reference genome analysis sets☆53Updated last year
- Structural variant merging tool☆50Updated 9 months ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated last month
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- ☆21Updated 3 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆34Updated 11 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- Toolkit for calling structural variants using short or long reads☆104Updated this week
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- python plotly Circos from VCF☆36Updated 11 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- ☆53Updated 2 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 7 months ago