jgust1 / needLRLinks
A structural variant filtering and prioritization tool for long-read sequencing data
☆21Updated 2 weeks ago
Alternatives and similar repositories for needLR
Users that are interested in needLR are comparing it to the libraries listed below
Sorting:
- ☆39Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 10 months ago
- Structural Variant Index☆75Updated 7 months ago
- ☆48Updated 10 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆114Updated last week
- Same species annotation lift over pipeline.☆98Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- Toolkit for calling structural variants using short or long reads☆107Updated last month
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆34Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Tools for the analysis of structural variation in genomes☆80Updated last year
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆80Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- SV caller for nanopore data☆91Updated 5 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Somatic structural variant caller for long-read data☆71Updated last month
- Data and information about the Polaris study☆53Updated 5 years ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- Phased assembly variant caller☆121Updated 7 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 weeks ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- ☆16Updated 4 years ago
- WisecondorX — An evolved WISECONDOR☆100Updated 2 weeks ago
- ☆21Updated 3 years ago
- Fast and accurate coordinate conversion between assemblies☆113Updated 3 months ago