vborjesson / TC_hunterLinks
Locate transgenic insertion sites
☆11Updated 2 years ago
Alternatives and similar repositories for TC_hunter
Users that are interested in TC_hunter are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 2 months ago
- ☆23Updated 4 years ago
- Micro DNA identification☆23Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- ☆22Updated 6 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆17Updated 3 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆26Updated 3 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆24Updated 2 years ago
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated 3 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆12Updated last week
- ☆19Updated 10 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- ☆25Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- R package to detect splicing QTLs (sQTLs)☆12Updated last year
- SingleCell Nanopore sequencing data analysis☆60Updated 3 weeks ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Reconstruction of focal amplifications with long reads☆21Updated last week
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 4 months ago