This fork of Illumina/ExpansionHunter introduces new features and optimizations
☆17Aug 20, 2026Updated last week
Alternatives and similar repositories for ExpansionHunter
Users that are interested in ExpansionHunter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ascertained Sequentially Markovian Coalescent☆19Oct 22, 2025Updated 10 months ago
- tandemtwister: Tandem repeat genotyping tool☆22Feb 1, 2026Updated 7 months ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆52Updated this week
- A tool for estimating repeat sizes☆218Jan 30, 2024Updated 2 years ago
- Short Tandem Repeat disease loci resource☆29Aug 24, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆13Apr 3, 2025Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- Copy number estimation and variant calling for duplicated genes using WGS.☆39Apr 29, 2026Updated 4 months ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆19Updated this week
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Computes FRC from SAM/BAM file and not from afg files☆17Oct 5, 2018Updated 7 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆23Nov 4, 2024Updated last year
- LASSO for GWAS with summary statistics☆80Sep 24, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11May 12, 2026Updated 3 months ago
- ☆49Updated this week
- ☆22Jun 12, 2023Updated 3 years ago
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated last year
- A tool for profiling long STRs from short reads☆107Apr 19, 2021Updated 5 years ago
- A tool for visualizing alignments of reads in regions containing tandem repeats☆92Apr 20, 2026Updated 4 months ago
- ☆16Apr 10, 2024Updated 2 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 2 years ago
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- Targeted genotyper for complex polymorphic genes☆46Aug 25, 2026Updated last week
- ☆23Sep 21, 2021Updated 4 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- Tools for merging Tandem Repeat VCF files☆39Apr 30, 2025Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆24Jul 30, 2025Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated last year
- An analytical approach for GWAS-by-Subtraction☆15May 27, 2025Updated last year
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Expanded STR algorithm for Illumina sequencing data☆24Sep 11, 2022Updated 3 years ago
- Glue between Clinical Genomics apps☆12Updated this week
- ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …☆20Aug 6, 2025Updated last year
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- My rstudio::conf 2018 presentation slides☆10Jan 16, 2023Updated 3 years ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 4 years ago
- Scalable genomic analysis pipelines, written in WDL☆12Updated this week