This fork of Illumina/ExpansionHunter introduces new features and optimizations
☆17May 14, 2026Updated last week
Alternatives and similar repositories for ExpansionHunter
Users that are interested in ExpansionHunter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Copy number estimation and variant calling for duplicated genes using WGS.☆36Apr 29, 2026Updated 3 weeks ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- Targeted genotyper for complex polymorphic genes☆41May 12, 2026Updated last week
- Ascertained Sequentially Markovian Coalescent☆18Oct 22, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Updated version of the Ollivander's plugin for Spigot☆11Apr 30, 2026Updated 3 weeks ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆45May 11, 2026Updated last week
- Library and interface for the LT series of Fender Amplifiers☆14Nov 17, 2024Updated last year
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated 10 months ago
- ☆40May 22, 2024Updated 2 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 2 years ago
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 6 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A structural variant filtering and prioritization tool for long-read sequencing data☆42Updated this week
- Tandem Repeats Finder: a program to analyze DNA sequences☆22Jul 30, 2025Updated 9 months ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆23Apr 28, 2026Updated 3 weeks ago
- Glue between Clinical Genomics apps☆12Updated this week
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆18Mar 26, 2026Updated last month
- ☆45May 8, 2026Updated 2 weeks ago
- My rstudio::conf 2018 presentation slides☆10Jan 16, 2023Updated 3 years ago
- Scalable genomic analysis pipelines, written in WDL☆12May 7, 2026Updated 2 weeks ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Apr 24, 2026Updated last month
- A rapido and lightweight method for PGS computation☆14Apr 20, 2026Updated last month
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- ☆10Apr 17, 2023Updated 3 years ago
- Core utilities for single-cell RNA-seq☆13Apr 6, 2026Updated last month
- Gaussian imputation of GWAS summary statistics☆15Apr 16, 2015Updated 11 years ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆11Feb 16, 2019Updated 7 years ago
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- Interactive GridFTP client☆17Jan 7, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PopSTR - A Population based microsatellite genotyper☆32Oct 23, 2023Updated 2 years ago
- LASSO for GWAS with summary statistics☆79Sep 24, 2020Updated 5 years ago
- R package providing query functionality to BioMart instances like Ensembl☆49Apr 7, 2026Updated last month
- Compilation of R heatmap functions.☆14Oct 12, 2021Updated 4 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- The goal of High Frontier is a civilization-like game, which uses more realistic modelling of economy, climate, research and migration. U…☆15May 13, 2024Updated 2 years ago
- a set of NGS pipelines☆24Apr 30, 2026Updated 3 weeks ago