Alternatives and similar repositories for ExpansionHunter

Users that are interested in ExpansionHunter are comparing it to the libraries listed below

• WeiWei060512 / NUMTs-detection
  Detecting NUMTs from WGS
  ☆12Updated last year
• ArkingLab / MitoHPC
  ☆23Updated last year
• fakedrtom / SVAFotate
  ☆44Updated 11 months ago
• Illumina / RepeatCatalogs
  ☆21Updated 3 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated last month
• dpuiu / MitoHPC
  ☆14Updated last year
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆27Updated last year
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆38Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆36Updated 2 years ago
• ryanlayer / stix
  Structural Variant Index
  ☆75Updated 8 months ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆59Updated this week
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆35Updated last week
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 8 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• tvkent / GERPplusplus
  GERP++ code from Sidow Lab modified by Kevin Thornton to compile properly.
  ☆22Updated 8 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆53Updated last year
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated last year
• mchowdh200 / samplot-ml
  ☆22Updated 4 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated 2 months ago
• campanam / BaitsTools
  Software for hybridization capture bait design
  ☆11Updated last year
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 3 years ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated last month
• genepi / haplocheck
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
  ☆18Updated 2 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆33Updated last month
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last month