This fork of Illumina/ExpansionHunter introduces new features and optimizations
☆19Oct 25, 2026Updated last week
Alternatives and similar repositories for ExpansionHunter
Users that are interested in ExpansionHunter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ascertained Sequentially Markovian Coalescent☆19Oct 23, 2026Updated last week
- tandemtwister: Tandem repeat genotyping tool☆23Feb 1, 2026Updated 9 months ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆53Updated this week
- A deletion and duplication caller from NGS paired-end data.☆14Aug 22, 2025Updated last year
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆20Oct 20, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A tool for estimating repeat sizes☆219Jan 30, 2024Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- Genomics workflows for CPG using Hail Batch☆12Sep 8, 2026Updated last month
- Smart and Accurate Polishing of Phased Haplotypes Integrating Read Enhancements (SAPPHIRE)☆11Mar 21, 2026Updated 7 months ago
- Short Tandem Repeat disease loci resource☆30Updated this week
- Computational suite for analyzing chromosomes and centromeres based on distance values between DNA motifs☆12Mar 5, 2026Updated 7 months ago
- ☆20Nov 30, 2023Updated 2 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆13Apr 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 5 years ago
- ☆14Feb 13, 2023Updated 3 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆42Updated this week
- ARG-Needle library for representing and analyzing ancestral recombination graphs (ARGs)☆10Nov 21, 2025Updated 11 months ago
- A tool for profiling long STRs from short reads☆107Apr 19, 2021Updated 5 years ago
- Copy number estimation and variant calling for duplicated genes using WGS.☆41Apr 29, 2026Updated 6 months ago
- A tool for visualizing alignments of reads in regions containing tandem repeats☆92Apr 20, 2026Updated 6 months ago
- Computes FRC from SAM/BAM file and not from afg files☆17Oct 5, 2018Updated 8 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- LASSO for GWAS with summary statistics☆81Sep 24, 2020Updated 6 years ago
- Report generator for Chanjo output☆10Jun 5, 2024Updated 2 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆23Nov 4, 2024Updated last year
- ☆22Jun 12, 2023Updated 3 years ago
- non-reference transposable element detection using sTELLeR☆13Nov 6, 2024Updated last year
- Scripts for users of GVL cloud instances. These scripts configure GVL servers as command line bioinformatics platforms.☆12May 22, 2019Updated 7 years ago
- ☆34Aug 28, 2026Updated 2 months ago
- A collection of utilities for working with next generation (MPS) sequencing data in Groovy☆15Sep 25, 2026Updated last month
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆53Oct 22, 2026Updated last week
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 7 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 3 years ago
- GitHub Action for running `woke` on Pull Requests☆13Sep 15, 2020Updated 6 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Dec 15, 2021Updated 4 years ago