This fork of Illumina/ExpansionHunter introduces new features and optimizations
☆14Feb 1, 2026Updated last month
Alternatives and similar repositories for ExpansionHunter
Users that are interested in ExpansionHunter are comparing it to the libraries listed below
Sorting:
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 4 months ago
- Copy number estimation and variant calling for duplicated genes using WGS.☆32Feb 24, 2026Updated last week
- Scripts and utilities for analyzing tandem repeats (TRs).☆42Feb 11, 2026Updated 2 weeks ago
- ☆15Apr 10, 2024Updated last year
- Genotype dimension reduction research. Code for manuscript "UMAP reveals cryptic population structure and phenotype heterogeneity in larg…☆18Aug 15, 2023Updated 2 years ago
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 6 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Dec 18, 2025Updated 2 months ago
- ☆20Nov 30, 2023Updated 2 years ago
- A structural variant filtering and prioritization tool for long-read sequencing data☆36Dec 14, 2025Updated 2 months ago
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 2 years ago
- Targeted genotyper for complex polymorphic genes☆36Feb 24, 2026Updated last week
- Complex structural variant detection from WGS data☆31Jan 10, 2025Updated last year
- PopSTR - A Population based microsatellite genotyper☆32Oct 23, 2023Updated 2 years ago
- LASSO for GWAS with summary statistics☆79Sep 24, 2020Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- ☆38May 22, 2024Updated last year
- ☆41Jun 16, 2025Updated 8 months ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jan 28, 2026Updated last month
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Feb 19, 2026Updated last week
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Jan 12, 2024Updated 2 years ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- ☆12Aug 23, 2023Updated 2 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- ☆12Apr 21, 2023Updated 2 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 2 years ago
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated last week
- 集鱼类拍照、PIT ID识别、体长、体宽、眼宽、鳍长等15个体型特征以及体重信息收集和记录于一体的软件——测鱼宝☆21Mar 5, 2025Updated 11 months ago
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 6 years ago
- ☆12Feb 16, 2025Updated last year
- Scalable genomic analysis pipelines, written in WDL☆11Feb 24, 2026Updated last week
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Dec 18, 2025Updated 2 months ago
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 2 months ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago