PMBio / deeprvatLinks
☆40Updated 2 months ago
Alternatives and similar repositories for deeprvat
Users that are interested in deeprvat are comparing it to the libraries listed below
Sorting:
- ☆39Updated last month
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 8 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 7 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last month
- A network-based approach for exon set enrichment☆15Updated last month
- This repository hosts a minimal version of a Python API for BPNet.☆48Updated last month
- Explore and download data from the recount3 project☆36Updated 3 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 3 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 7 months ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 4 months ago
- Dataloader for applying sequence models to personalized genomics☆27Updated last week
- A method for analyzing scATAC-seq experiments.☆33Updated 2 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 2 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- ☆17Updated last year
- ☆70Updated 2 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- ☆38Updated 5 years ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 4 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 8 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Upload test☆22Updated last year
- Annotated sequence data☆11Updated 6 months ago
- University of Cambridge PhD thesis☆15Updated 4 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- Builds a PEP from SRA or GEO accessions☆53Updated last month
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆44Updated last week