PMBio / deeprvatLinks
☆40Updated last month
Alternatives and similar repositories for deeprvat
Users that are interested in deeprvat are comparing it to the libraries listed below
Sorting:
- ☆39Updated last month
- No Read Left Behind - Software for Motif Discovery from SELEX Data☆7Updated last year
- Explore and download data from the recount3 project☆35Updated 2 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 6 months ago
- A network-based approach for exon set enrichment☆15Updated 2 weeks ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆64Updated 2 years ago
- Builds a PEP from SRA or GEO accessions☆52Updated 3 weeks ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last week
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆84Updated 2 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 2 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 8 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆43Updated last week
- ☆38Updated 5 years ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 3 months ago
- Dataloader for applying sequence models to personalized genomics☆27Updated last week
- ☆17Updated last year
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆94Updated last year
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆76Updated 2 weeks ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 7 months ago
- ☆44Updated 9 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated this week
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆71Updated 4 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 6 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 8 months ago
- Phenome Exome Association and Correlation Of Key phenotypes☆27Updated 3 years ago