Alternatives and similar repositories for toytree

Users that are interested in toytree are comparing it to the libraries listed below

• jeetsukumaran / DendroPy
  A Python library for phylogenetic scripting, simulation, data processing and manipulation.
  ☆222Updated 2 months ago
• Zsailer / phylopandas
  Pandas DataFrames for phylogenetics
  ☆74Updated 4 years ago
• biosustain / croissance
  Tool for estimating growth rates from microbial growth curves
  ☆31Updated 4 years ago
• pycogent / pycogent
  PyCogent: Official repository for software and unit tests
  ☆91Updated 4 years ago
• scikit-bio / scikit-bio-cookbook
  Recipes for bioinformatics analyses with scikit-bio
  ☆42Updated last week
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 5 months ago
• Edinburgh-Genome-Foundry / sequenticon
  Generate identicons for DNA sequences with Python
  ☆38Updated 4 months ago
• roryk / ipython-cluster-helper
  Tool to easily start up an IPython cluster on different schedulers.
  ☆146Updated 5 years ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆88Updated 7 years ago
• brentp / interlap
  fast, pure-python interval overlap testing
  ☆52Updated 4 years ago
• prashnts / metaRNA
  Find target sites for the miRNAs in genomic sequences
  ☆18Updated 8 years ago
• sjspielman / pyvolve
  Python library to simulate evolutionary sequence data
  ☆80Updated 3 years ago
• WarrenWeckesser / heatmapcluster
  A python library for generating a clustered heatmap with dendrograms.
  ☆34Updated 3 years ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆69Updated last year
• cgat-developers / ruffus
  CGAT-ruffus is a lightweight python module for running computational pipelines
  ☆174Updated 4 years ago
• pyranges / ncls
  NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.
  ☆223Updated 2 months ago
• pygridtools / drmaa-python
  Python wrapper around the C DRMAA library.
  ☆108Updated 6 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆35Updated 2 years ago
• biokit / biokit
  Bioinformatics in Python
  ☆58Updated last year
• Edinburgh-Genome-Foundry / genome_collector
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆22Updated 2 years ago
• IQTLabs / squiggle
  📈 DNA Sequence Visualization for Humans
  ☆41Updated 4 years ago
• ImSoErgodic / py-upset
  A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
  ☆319Updated 7 years ago
• schlegelp / catheat
  Plot categorical heatmaps with seaborn
  ☆18Updated 3 years ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆118Updated 2 years ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 5 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last month
• JetBrains-Research / snakecharm
  Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
  ☆62Updated last month
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated last month
• themantalope / pydendroheatmap
  A tool for generating heatmaps from hierarchically clustered data.
  ☆40Updated 7 years ago