eaton-lab / toytreeView external linksLinks
A minimalist tree plotting library using toyplot graphs
☆188Updated this week
Alternatives and similar repositories for toytree
Users that are interested in toytree are comparing it to the libraries listed below
Sorting:
- TreeSwift: Fast tree module for Python 3☆85Nov 19, 2024Updated last year
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆229Jan 8, 2026Updated last month
- A tool for exploring large trees in the browser☆119Feb 4, 2026Updated last week
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection …☆867Dec 23, 2025Updated last month
- fastest GTF/GFF-to-BED converter chilling around☆31Jan 20, 2026Updated 3 weeks ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 2 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Jan 4, 2025Updated last year
- DTU analysis tool inspired by llamas☆12Sep 28, 2025Updated 4 months ago
- An extensible python-based genomics visualization engine☆144Aug 11, 2023Updated 2 years ago
- A console-based alignment viewer☆118Updated this week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆153Dec 31, 2025Updated last month
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆116Updated this week
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated last year
- HyPhy standalone analyses☆52Jan 5, 2026Updated last month
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Feb 23, 2020Updated 5 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Feb 17, 2021Updated 4 years ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- just annotate it, dammit!☆93Aug 22, 2023Updated 2 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆85Oct 2, 2024Updated last year
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 2 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated last month
- phylogenetics tools for linux (and other mostly posix compliant) computers☆122Jan 17, 2025Updated last year
- Rapid determination of appropriate reference genomes.☆99Jan 22, 2025Updated last year
- Create a tree using Mash distances☆182Oct 24, 2023Updated 2 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Jul 28, 2019Updated 6 years ago
- convert various features into a GFF-like file for use in genome browsers☆72Jan 27, 2026Updated 2 weeks ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆29Oct 8, 2025Updated 4 months ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 6 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated 9 months ago
- Software package for estimating fine-scale recombination rate.☆17Jun 8, 2021Updated 4 years ago
- ☆21Apr 2, 2015Updated 10 years ago
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago