eaton-lab / toytreeLinks
A minimalist tree plotting library using toyplot graphs
☆177Updated 4 months ago
Alternatives and similar repositories for toytree
Users that are interested in toytree are comparing it to the libraries listed below
Sorting:
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆217Updated last month
- Tool for estimating growth rates from microbial growth curves☆31Updated 3 years ago
- Pandas DataFrames for phylogenetics☆73Updated 4 years ago
- PyCogent: Official repository for software and unit tests☆91Updated 4 years ago
- fast, pure-python interval overlap testing☆52Updated 4 years ago
- Recipes for bioinformatics analyses with scikit-bio☆42Updated 9 years ago
- A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.☆319Updated 7 years ago
- Python library to simulate evolutionary sequence data☆80Updated 3 years ago
- Plot categorical heatmaps with seaborn☆18Updated 2 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆174Updated 4 years ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Updated 7 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 5 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 4 months ago
- Generate identicons for DNA sequences with Python☆38Updated 2 months ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Updated 2 years ago
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆223Updated last month
- 📈 DNA Sequence Visualization for Humans☆41Updated 4 years ago
- Find target sites for the miRNAs in genomic sequences☆18Updated 8 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated last year
- Configure workflow/pipeline tests using yaml files.☆68Updated last year
- Efficient handling of FASTQ files from Python☆51Updated this week
- Python wrapper around the C DRMAA library.☆108Updated 6 years ago
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 7 years ago
- A lightweight parallel task engine☆147Updated 5 years ago
- Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection …☆840Updated 2 weeks ago
- TreeSwift: Fast tree module for Python 3☆81Updated 8 months ago
- A Python package for exploring and analysing genetic variation data☆297Updated this week
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆16Updated 2 years ago
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago