eaton-lab / toytree
A minimalist tree plotting library using toyplot graphs
☆176Updated 2 weeks ago
Alternatives and similar repositories for toytree:
Users that are interested in toytree are comparing it to the libraries listed below
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆215Updated last month
- A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.☆317Updated 6 years ago
- PyCogent: Official repository for software and unit tests☆91Updated 4 years ago
- Pandas DataFrames for phylogenetics☆73Updated 3 years ago
- A Python package for exploring and analysing genetic variation data☆296Updated 2 weeks ago
- Fishers Exact Test for Python (Cython)☆65Updated last month
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Updated 7 years ago
- Python library to simulate evolutionary sequence data☆78Updated 3 years ago
- cameo - computer aided metabolic engineering & optimization☆115Updated 2 years ago
- fast, pure-python interval overlap testing☆52Updated 4 years ago
- Draw UpSet plots with Matplotlib☆348Updated 11 months ago
- Find target sites for the miRNAs in genomic sequences☆19Updated 7 years ago
- Tool to easily start up an IPython cluster on different schedulers.☆147Updated 4 years ago
- The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.☆220Updated 7 months ago
- Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection …☆820Updated this week
- Tool for estimating growth rates from microbial growth curves☆29Updated 3 years ago
- Efficient handling of FASTQ files from Python☆51Updated 7 months ago
- Recipes for bioinformatics analyses with scikit-bio☆41Updated 8 years ago
- A declarative interactive genomics visualization library for Python.☆224Updated 2 months ago
- A console-based alignment viewer☆109Updated last month
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆101Updated this week
- A cookiecutter template for Snakemake workflows☆58Updated 3 years ago
- D3.js based visualizations of cobrapy metabolic models☆45Updated 5 years ago
- Monitor computational workflows in real time☆72Updated 10 months ago
- Plot categorical heatmaps with seaborn☆18Updated 2 years ago
- An extensible python-based genomics visualization engine☆144Updated last year
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 2 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆174Updated 3 years ago
- Scalable genetics toolkit☆253Updated this week
- Generate identicons for DNA sequences with Python☆37Updated 2 weeks ago