A minimalist tree plotting library using toyplot graphs
☆200Aug 30, 2026Updated this week
Alternatives and similar repositories for toytree
Users that are interested in toytree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TreeSwift: Fast tree module for Python 3☆88Nov 19, 2024Updated last year
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection …☆884Jun 1, 2026Updated 2 months ago
- A tool for exploring large trees in the browser☆133Jul 27, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆236Aug 23, 2026Updated last week
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Jul 29, 2026Updated last month
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆258Jun 25, 2026Updated 2 months ago
- Evolution simulator with extinct lineages☆25Apr 3, 2025Updated last year
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 5 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- A console-based alignment viewer☆121Apr 21, 2026Updated 4 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- An extensible python-based genomics visualization engine☆145Aug 11, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automated and parallel pipeline for the Curation of UltraconseRved Elements☆10Jan 16, 2025Updated last year
- Python library to simulate evolutionary sequence data☆80Dec 16, 2021Updated 4 years ago
- ☆82May 2, 2026Updated 3 months ago
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated 2 months ago
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 3 years ago
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- DTU analysis tool inspired by llamas☆12Aug 19, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- phylogenetics tools for linux (and other mostly posix compliant) computers☆127Apr 18, 2026Updated 4 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆128Updated this week
- HyPhy standalone analyses☆56Jan 5, 2026Updated 7 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆156Dec 31, 2025Updated 8 months ago
- 🔗Genome assembly scaffolder using minimizer graphs☆88Aug 5, 2026Updated 3 weeks ago
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago
- Gotree: a set of command line tools and an API to manipulate phylogenetic trees.☆151Aug 20, 2026Updated last week
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python framework for doing ancestral sequence reconstruction☆45Aug 3, 2026Updated 3 weeks ago
- Micro tasks manager written in pure Python☆18Aug 26, 2017Updated 9 years ago
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 9 years ago
- Context manager to maintain your temporary directories/files.☆17Jan 23, 2023Updated 3 years ago
- Python bindings for the parasail C library.☆118Sep 4, 2024Updated last year
- just annotate it, dammit!☆94Aug 22, 2023Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago