Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
☆128Dec 6, 2021Updated 4 years ago
Alternatives and similar repositories for BuddySuite
Users that are interested in BuddySuite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 3 months ago
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵☆28Apr 13, 2026Updated 2 months ago
- ☆11Nov 17, 2020Updated 5 years ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆15Mar 20, 2023Updated 3 years ago
- Simulate short-reads datasets using probabilistic models☆11Jun 1, 2013Updated 13 years ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆236May 20, 2026Updated last month
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated 2 weeks ago
- Error correction for Illumina RNA-seq reads☆66Jan 4, 2026Updated 5 months ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 4 years ago
- Conversations about teaching computational skills to undergraduates☆12Sep 22, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆253Jun 16, 2026Updated last week
- ☆19Dec 5, 2020Updated 5 years ago
- An imagemagick-like frontend to Biopython SeqIO☆118Mar 18, 2024Updated 2 years ago
- Pandas DataFrames for phylogenetics☆75Jun 6, 2021Updated 5 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆20Feb 26, 2024Updated 2 years ago
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 10 months ago
- Calculate summary statistics and manipulate multiple sequence alignments☆98Jan 28, 2026Updated 5 months ago
- A jupyter notebook tutorial for making high-quality barplot figures from population structure analyses (Admixture, Structure) with Python…☆16Apr 17, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Interactive viewer of phylogenetic trees☆200Jun 16, 2026Updated last week
- Python libraries and utilities for computational biology☆37Jun 6, 2014Updated 12 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 4 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆24Jun 2, 2026Updated 3 weeks ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 5 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆469Jun 17, 2026Updated last week
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24May 29, 2026Updated last month
- SambaR: Snp datA Management and Basic Analyses in R☆32Jun 9, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tutorials on phylogenetic and phylogenomic inference☆397Apr 12, 2026Updated 2 months ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- ☆28Oct 5, 2018Updated 7 years ago
- PASTA (Practical Alignment using SATe and Transitivity)☆96Jun 5, 2025Updated last year
- Accurate Species TRee ALgorithm☆279Apr 1, 2024Updated 2 years ago
- Python library to simulate evolutionary sequence data☆80Dec 16, 2021Updated 4 years ago
- Recovering genes from targeted sequence capture data☆135Jan 9, 2026Updated 5 months ago