Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
☆129Dec 6, 2021Updated 4 years ago
Alternatives and similar repositories for BuddySuite
Users that are interested in BuddySuite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵☆28Oct 23, 2026Updated last week
- ☆16Mar 20, 2023Updated 3 years ago
- ☆11Nov 17, 2020Updated 5 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 7 months ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆237Updated this week
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 3 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 12 years ago
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Jul 29, 2021Updated 5 years ago
- Error correction for Illumina RNA-seq reads☆66Jan 4, 2026Updated 9 months ago
- Conversations about teaching computational skills to undergraduates☆12Sep 22, 2021Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 4 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Sep 27, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆24Jun 2, 2021Updated 5 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- An imagemagick-like frontend to Biopython SeqIO☆121Mar 18, 2024Updated 2 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆257Updated this week
- Python library to simulate evolutionary sequence data☆80Dec 16, 2021Updated 4 years ago
- Simulate short-reads datasets using probabilistic models☆12Jun 1, 2013Updated 13 years ago
- ☆21Dec 5, 2020Updated 5 years ago
- Pandas DataFrames for phylogenetics☆75Jun 6, 2021Updated 5 years ago
- Interactive viewer of phylogenetic trees☆204Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Explore spaces of phylogenetic trees☆30Aug 28, 2025Updated last year
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 7 years ago
- A tool for managing your pores☆10Jul 22, 2026Updated 3 months ago
- A jupyter notebook tutorial for making high-quality barplot figures from population structure analyses (Admixture, Structure) with Python…☆16Apr 17, 2025Updated last year
- PASTA (Practical Alignment using SATe and Transitivity)☆97Jun 5, 2025Updated last year
- Calculate summary statistics and manipulate multiple sequence alignments☆102Jan 28, 2026Updated 9 months ago
- A collection of Phylogenetics tools for creating and manipulating networks and trees.☆10Oct 12, 2017Updated 9 years ago
- ORTHOSKIM allows in silico capture of targeted sequences in genomic or transcriptomic libraries.☆10Apr 7, 2025Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆107May 31, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Load numpy arrays and HDF5 files from VCF (variant call format)☆32Jun 27, 2017Updated 9 years ago
- Assembly by Reduced Complexity (ARC)☆41Mar 29, 2016Updated 10 years ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 9 years ago
- Tutorials on phylogenetic and phylogenomic inference☆402Apr 12, 2026Updated 6 months ago
- Guide to transcriptome assembly & analysis☆21Apr 12, 2017Updated 9 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆21Feb 26, 2024Updated 2 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago