Zsailer / phylopandasLinks
Pandas DataFrames for phylogenetics
☆74Updated 4 years ago
Alternatives and similar repositories for phylopandas
Users that are interested in phylopandas are comparing it to the libraries listed below
Sorting:
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- PyCogent: Official repository for software and unit tests☆91Updated 4 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated 2 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 5 months ago
- Python library to simulate evolutionary sequence data☆80Updated 3 years ago
- Python interface to amino acid properties and IEDB☆57Updated 10 months ago
- Efficient handling of FASTQ files from Python☆51Updated 3 weeks ago
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 3 years ago
- SRA python tools☆11Updated 4 years ago
- Find common blocks and differences between DNA sequences☆42Updated 4 months ago
- locally query the ncbi taxonomy☆40Updated 2 years ago
- Code for DNA plasmid editing.☆43Updated 7 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- Monitor computational workflows in real time☆74Updated last year
- Biological Graphic tool in Python☆34Updated 5 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated last month
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Updated 7 years ago
- Python wrapper around Nextflow.☆60Updated 3 weeks ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Updated 9 years ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆60Updated 4 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Python bindings for the TaxonKit library☆41Updated 2 months ago
- TreeSwift: Fast tree module for Python 3☆81Updated 9 months ago
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆68Updated 2 years ago
- a minimal, scriptable genome browser for python☆51Updated 8 months ago
- Python package to plot sequence logos☆29Updated last year
- ☆22Updated 4 years ago
- A Python package for gene network analysis☆32Updated 3 years ago