Alternatives and similar repositories for phylopandas

Users that are interested in phylopandas are comparing it to the libraries listed below

• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆59Updated 3 years ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• dmnfarrell / pybioviz
  bioinformatics visualization tools with pyviz/bokeh
  ☆20Updated last year
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆34Updated last year
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆73Updated last year
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆65Updated 2 months ago
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated last year
• widdowquinn / 2018-03-06-ibioic
  Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
  ☆20Updated 7 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆40Updated 3 weeks ago
• biosustain / goodbye-genbank
  A Python package for Biopython that gives feature annotations from GenBank records a new and better life
  ☆14Updated 9 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆40Updated 8 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• jbloomlab / dmslogo
  draw sequence logos tailored to deep mutational scanning (DMS) data
  ☆12Updated last year
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last week
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆50Updated 2 years ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated last month
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆59Updated 4 years ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆69Updated 3 years ago
• fhcrc / seqmagick
  An imagemagick-like frontend to Biopython SeqIO
  ☆115Updated last year
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆31Updated 3 weeks ago
• HadrienG / taxadb
  locally query the ncbi taxonomy
  ☆39Updated 2 years ago
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆59Updated last month
• jwintersinger / kablammo
  Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.
  ☆66Updated 2 years ago
• brentp / pyfasta
  fast, memory-efficient, pythonic (and command-line) access to fasta sequence files
  ☆87Updated 7 years ago
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆21Updated 5 years ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆36Updated 7 years ago
• Ad115 / EnsemblRest
  A Python interface to the Ensembl REST APIs, biological data at your fingertips.
  ☆12Updated last year
• Edinburgh-Genome-Foundry / genome_collector
  Easily download genomes and build BLAST/Bowtie indexes in Python
  ☆21Updated 2 years ago