Pandas DataFrames for phylogenetics
☆75Jun 6, 2021Updated 5 years ago
Alternatives and similar repositories for phylopandas
Users that are interested in phylopandas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interactive tree visualizations in Python (powered by Vega).☆11Sep 26, 2019Updated 7 years ago
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆237Updated this week
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- A simple graphical guide to working as a team on Github☆34Aug 30, 2018Updated 8 years ago
- Python framework for doing ancestral sequence reconstruction☆45Sep 7, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Speedrunning PLM pretraining☆14Sep 22, 2026Updated last month
- python program for analyzing isothermal titration calorimetry data☆30Mar 25, 2019Updated 7 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 10 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- locally query the ncbi taxonomy☆39Dec 8, 2022Updated 3 years ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago
- python wrapper to dpryan79's bigwig library using cffi☆18May 13, 2016Updated 10 years ago
- Estimating evolutionary coevality☆11Jul 16, 2026Updated 3 months ago
- Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files☆129Dec 6, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Differentiable Pairing using Soft Scores☆11May 20, 2024Updated 2 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 9 months ago
- Dot: An interactive dot plot viewer for comparative genomics☆39Jun 22, 2026Updated 4 months ago
- Python bindings for the TaxonKit library☆43Oct 1, 2026Updated 3 weeks ago
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 2 weeks ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- Bioinformatics pipeline used in the Laboratory of Viral Metagenomics (KU Leuven) to trim and assemble paired-end Illumina reads, and clas…☆11Nov 6, 2025Updated 11 months ago
- Quartet Sampling method for phylogenetic branch support evaluation☆21Feb 26, 2024Updated 2 years ago
- An R package for using dplyr on matched tree and data objects☆33Feb 19, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- C++ package for analysing CRISPR off targets☆21Apr 26, 2021Updated 5 years ago
- Efficient pythonic random access to fasta subsequences☆489Updated this week
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 7 months ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆96Aug 11, 2025Updated last year
- The uncompromising Jupyter notebook formatter.☆14Jan 26, 2024Updated 2 years ago
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 6 years ago
- Python function that performs a balanced cut-tree of a SciPy linkage matrix☆13Jul 19, 2023Updated 3 years ago
- Nonparametric Analysis of Response Curves from Thermal Proteome Profiling Experiments☆13May 8, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆257Updated this week
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 6 years ago
- Pipelines for eukaryotic pangenome analysis from McCarthy & Fitzpatrick (2019).☆12Jun 7, 2019Updated 7 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆39Aug 18, 2023Updated 3 years ago
- GFF toolkit☆17Oct 20, 2026Updated last week
- Python library for adding visual effects to video streams☆12Dec 20, 2019Updated 6 years ago
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 8 months ago