Zsailer / phylopandasLinks
Pandas DataFrames for phylogenetics
☆74Updated 4 years ago
Alternatives and similar repositories for phylopandas
Users that are interested in phylopandas are comparing it to the libraries listed below
Sorting:
- bioinformatics visualization tools with pyviz/bokeh☆20Updated last year
- PyCogent: Official repository for software and unit tests☆91Updated 4 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated 2 years ago
- Python library to simulate evolutionary sequence data☆80Updated 3 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Updated 2 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- Python wrapper around Nextflow.☆60Updated 3 weeks ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- Fishers Exact Test for Python (Cython)☆66Updated 5 months ago
- A cookiecutter template for Snakemake workflows☆59Updated 3 years ago
- Find common blocks and differences between DNA sequences☆41Updated 5 months ago
- Python interface to amino acid properties and IEDB☆57Updated 11 months ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆60Updated 4 years ago
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆88Updated 7 years ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆19Updated 7 years ago
- a minimal, scriptable genome browser for python☆51Updated 8 months ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- locally query the ncbi taxonomy☆39Updated 2 years ago
- 🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more☆45Updated 3 months ago
- Monitor computational workflows in real time☆73Updated last year
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Updated 9 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆158Updated last month
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated last month
- Python bindings for the TaxonKit library☆40Updated 2 months ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆111Updated last week
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆12Updated last year
- Code for DNA plasmid editing.☆43Updated 7 years ago