Zsailer / phylopandasLinks
Pandas DataFrames for phylogenetics
☆74Updated 4 years ago
Alternatives and similar repositories for phylopandas
Users that are interested in phylopandas are comparing it to the libraries listed below
Sorting:
- bioinformatics visualization tools with pyviz/bokeh☆20Updated 2 years ago
- PyCogent: Official repository for software and unit tests☆91Updated 4 years ago
- Python library to simulate evolutionary sequence data☆80Updated 4 years ago
- Monitor computational workflows in real time☆74Updated last year
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 9 months ago
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Updated 3 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- Python wrapper around Nextflow.☆61Updated last month
- A cookiecutter template for Snakemake workflows☆60Updated 3 years ago
- Find common blocks and differences between DNA sequences☆42Updated last month
- Biological Graphic tool in Python☆34Updated 5 years ago
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆37Updated 2 years ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆63Updated 5 years ago
- Python interface to amino acid properties and IEDB☆57Updated last year
- fast, memory-efficient, pythonic (and command-line) access to fasta sequence files☆87Updated 8 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 5 months ago
- GO enrichment with python -- pandas meets networkx☆88Updated 5 years ago
- locally query the ncbi taxonomy☆39Updated 3 years ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 7 years ago
- A Python interface to the Ensembl REST APIs, biological data at your fingertips.☆11Updated last year
- SRA python tools☆11Updated 4 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- ☆15Updated 3 years ago
- A python library for generating a clustered heatmap with dendrograms.☆34Updated 3 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆114Updated last week
- Python bindings for the TaxonKit library☆41Updated 3 weeks ago
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Updated 9 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 8 months ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year