BRAKER re-implemented with snakemake
☆88Oct 7, 2026Updated this week
Alternatives and similar repositories for BRAKER4
Users that are interested in BRAKER4 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tiberius is a deep learning gene finder.☆141Updated this week
- This is the standalone version of the EviAnn pipeline☆187Updated this week
- ☆160Aug 11, 2026Updated 2 months ago
- Using Deep Learning to predict gene annotations☆308Updated this week
- a gap-filling tools of genome in complex region.☆27Dec 30, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This is a modified version of EDTA -- zgtools☆20Sep 18, 2026Updated 3 weeks ago
- ☆19Feb 24, 2026Updated 7 months ago
- ☆25Sep 22, 2026Updated 2 weeks ago
- Successor of bwa-mem for short-read alignment☆352Oct 1, 2026Updated last week
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆67May 17, 2026Updated 4 months ago
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆32Apr 22, 2026Updated 5 months ago
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆99Dec 3, 2025Updated 10 months ago
- ☆24Feb 26, 2026Updated 7 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated 2 weeks ago
- ☆94Jul 31, 2026Updated 2 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆468Jun 17, 2026Updated 3 months ago
- Telomere compliment tools☆27Nov 17, 2025Updated 10 months ago
- An integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences.☆23Apr 13, 2026Updated 5 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆32Apr 11, 2025Updated last year
- Mosaic Genome Assembler☆29Sep 14, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Multi-genome synteny block visualization tool☆67Oct 2, 2026Updated last week
- A organelle de novo genome assembly toolkit☆85Feb 22, 2025Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- ☆20Aug 21, 2026Updated last month
- ☆29May 12, 2026Updated 4 months ago
- source code for EVM☆129Sep 22, 2026Updated 2 weeks ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆43Jul 23, 2025Updated last year
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆18Jun 28, 2024Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆55Aug 25, 2024Updated 2 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆50Aug 25, 2026Updated last month
- Python programs for processing GFF3 files☆105Jul 29, 2026Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆211Sep 28, 2026Updated last week
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆14Updated this week
- IQ-TREE version 3: software for phylogenetics☆169Updated this week