BRAKER re-implemented with snakemake
☆75Aug 6, 2026Updated this week
Alternatives and similar repositories for BRAKER4
Users that are interested in BRAKER4 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tiberius is a deep learning gene finder.☆129Jul 27, 2026Updated 2 weeks ago
- This is the standalone version of the EviAnn pipeline☆179Aug 3, 2026Updated last week
- ☆156Jul 23, 2026Updated 2 weeks ago
- Using Deep Learning to predict gene annotations☆301Jul 22, 2026Updated 2 weeks ago
- a gap-filling tools of genome in complex region.☆28Dec 30, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is a modified version of EDTA☆17Updated this week
- ☆20Feb 24, 2026Updated 5 months ago
- ☆24Nov 19, 2025Updated 8 months ago
- Successor of bwa-mem for short-read alignment☆319Updated this week
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 11 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆63May 17, 2026Updated 2 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆31Apr 22, 2026Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆259Jul 29, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆94Dec 3, 2025Updated 8 months ago
- ☆24Feb 26, 2026Updated 5 months ago
- ☆93Jul 31, 2026Updated last week
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Jul 1, 2026Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated last month
- An integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences.☆21Apr 13, 2026Updated 3 months ago
- Telomere compliment tools☆26Nov 17, 2025Updated 8 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆30Apr 11, 2025Updated last year
- Mosaic Genome Assembler☆29Jul 17, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-genome synteny block visualization tool☆63Updated this week
- A organelle de novo genome assembly toolkit☆82Feb 22, 2025Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆61Jul 5, 2026Updated last month
- ☆19Feb 10, 2026Updated 6 months ago
- ☆28May 12, 2026Updated 2 months ago
- source code for EVM☆126Nov 29, 2024Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆12Updated this week
- An R package to infer and analyze synteny networks from protein sequences☆43Jul 23, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 3 months ago
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆18Jun 28, 2024Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆54Aug 25, 2024Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆50Updated this week
- Python programs for processing GFF3 files☆105Jul 29, 2026Updated last week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆206Apr 27, 2026Updated 3 months ago
- IQ-TREE version 3: software for phylogenetics☆151Aug 3, 2026Updated last week