Fungal Validation and Identification Pipeline
☆16Oct 1, 2026Updated 3 weeks ago
Alternatives and similar repositories for FunVIP
Users that are interested in FunVIP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A whole-genome reference database of soil bacteria, fungi, and archaea☆14Jun 19, 2026Updated 4 months ago
- Effector prediction pipeline based on protein properties.☆17Jul 18, 2025Updated last year
- UFCG: Universal Fungal Core Genes☆37Jul 29, 2025Updated last year
- Parser and annotation tools using the FAPROTAX database (Louca S. et al., 2016)☆13Apr 8, 2022Updated 4 years ago
- Terminal viewer for pdb files☆22Jan 5, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis☆20Aug 17, 2026Updated 2 months ago
- A Vue.js plugin for generating interactive Sankey diagrams using Kraken report data☆11Jul 22, 2025Updated last year
- UI for checklistbank.org☆13Oct 23, 2026Updated last week
- FunFlux: A dedicated workflow for fungal genome assembly from short reads, decontamination, completeness validation, and comprehensive ge…☆14Oct 7, 2026Updated 3 weeks ago
- Companion code for Grenié et al. 2022 MEE "Harmonizing taxon names in biodiversity data: a review of tools, databases, and best practice…☆15Mar 17, 2026Updated 7 months ago
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆13Mar 25, 2026Updated 7 months ago
- The Ribosomal Operon Database (ROD)☆13Apr 2, 2025Updated last year
- A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local seq…☆45Apr 25, 2024Updated 2 years ago
- IQ-TREE version 3: software for phylogenetics☆175Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Sep 27, 2024Updated 2 years ago
- ☆23Mar 19, 2025Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio☆15Oct 16, 2026Updated 2 weeks ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- ☆32Updated this week
- DeepSeMS: a large language model reveals hidden biosynthetic potential of the global ocean microbiome.☆16Apr 24, 2026Updated 6 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆26Nov 9, 2022Updated 3 years ago
- A nomenclatural ontology for names (not concepts).☆14Oct 13, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 11 months ago
- A project aiming to revive and create patches for abandoned Forge versions☆10Feb 20, 2023Updated 3 years ago
- Pipeline for processing and analyzing CiFi data☆12Sep 24, 2026Updated last month
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 6 years ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated 2 months ago
- Public repository for the GSC web site.☆11Sep 29, 2026Updated last month
- Database of virus RdRp barcode sequences☆11Sep 11, 2026Updated last month
- R package for the Taxonomic Name Resolution Service☆11Sep 4, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- FASSO: Functional Annotations using Sequence and Structure Orthology☆10Jan 17, 2023Updated 3 years ago
- collection of random scripts for processing genome related files. the shell scripts are specific to my environment and may not work else…☆10Jul 19, 2018Updated 8 years ago
- ☆10Jul 15, 2022Updated 4 years ago
- ☆10Feb 25, 2026Updated 8 months ago
- ☆20Aug 31, 2026Updated last month
- my bin directory☆45Apr 7, 2026Updated 6 months ago
- ☆94Oct 23, 2026Updated last week