A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference
☆49Jul 20, 2026Updated this week
Alternatives and similar repositories for piqtree
Users that are interested in piqtree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for analysis of sequence divergence☆15Updated this week
- Python project to validate a phylogenetic fitted models is within the limits of inference☆20Apr 13, 2026Updated 3 months ago
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Jun 25, 2026Updated 3 weeks ago
- A new approach to obtaining local copies of ensembl data☆24Apr 23, 2026Updated 2 months ago
- Comparative Genomics Toolkit 3☆136Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆47Jul 12, 2026Updated last week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆42Jul 2, 2026Updated 2 weeks ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- phylobayes mpi☆28Feb 3, 2023Updated 3 years ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆334Mar 12, 2026Updated 4 months ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆64Mar 15, 2026Updated 4 months ago
- Visualize microbial evolution at the SNP level!☆16Aug 12, 2025Updated 11 months ago
- ☆20Jun 15, 2024Updated 2 years ago
- Variant call verification☆19May 12, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- IQ-TREE version 3: software for phylogenetics☆146Updated this week
- µbinfie blog☆19Jul 21, 2025Updated last year
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- Quality control for phylogenetic analyses☆13Jul 13, 2026Updated last week
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- ☆16Apr 11, 2026Updated 3 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆118Jun 18, 2026Updated last month
- ☆18Jun 11, 2024Updated 2 years ago
- ☆30Mar 6, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Sydney Phylogenetics Workshop☆75Jun 22, 2026Updated last month
- A simple pipeline for bacterial assembly and quality control☆16Updated this week
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- PAGAN2 multiple sequence aligner☆12Jul 2, 2024Updated 2 years ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆30Jun 9, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆200Jan 29, 2026Updated 5 months ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 7 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆50Feb 20, 2026Updated 5 months ago
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆32Updated this week
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated 3 months ago
- ☆136Aug 29, 2024Updated last year
- Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust 🦅☆15Jul 9, 2026Updated last week