iqtree / piqtreeLinks
A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference
☆29Updated this week
Alternatives and similar repositories for piqtree
Users that are interested in piqtree are comparing it to the libraries listed below
Sorting:
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- Recombination-free trees☆58Updated 2 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 10 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 3 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆36Updated 6 months ago
- Plasmid analysis using rearrangement distances☆42Updated last week
- Split Kmer Analysis☆65Updated 3 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆65Updated 2 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 3 months ago
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Bacterial GWAS analysis☆40Updated last week
- Code Safety Inspection Service☆20Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆14Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- Colinear block visualisation tool☆31Updated last year
- SC2 variant detection and composition pipeline☆17Updated last year
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆27Updated last month
- Gene-flank analysis tool☆27Updated 5 months ago
- Split k-mer analysis – version 2☆86Updated 3 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Genome size estimation from long read overlaps☆56Updated last month