A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference
☆47May 18, 2026Updated this week
Alternatives and similar repositories for piqtree
Users that are interested in piqtree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for analysis of sequence divergence☆15May 7, 2026Updated 2 weeks ago
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Apr 23, 2026Updated last month
- A new approach to obtaining local copies of ensembl data☆24Apr 23, 2026Updated 3 weeks ago
- Comparative Genomics Toolkit 3☆135Updated this week
- Python project to validate a phylogenetic fitted models is within the limits of inference☆20Apr 13, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆45May 8, 2026Updated 2 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆41Mar 31, 2026Updated last month
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Oct 21, 2021Updated 4 years ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 3 months ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 9 months ago
- phylobayes mpi☆28Feb 3, 2023Updated 3 years ago
- µbinfie blog☆19Jul 21, 2025Updated 10 months ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- A listing of software, tools and databases useful for virome analysis☆75Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A simple pipeline for bacterial assembly and quality control☆16May 14, 2026Updated last week
- ☆30Mar 6, 2025Updated last year
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆63Mar 15, 2026Updated 2 months ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Variant call verification☆17May 12, 2025Updated last year
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 9 months ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated last year
- A Rust-based library for phylogenetic analysis and manipulation☆20May 13, 2026Updated last week
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆31May 14, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 5 months ago
- Sydney Phylogenetics Workshop☆69Jul 10, 2025Updated 10 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆48Feb 20, 2026Updated 3 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆115Updated this week
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 6 months ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆29Nov 20, 2025Updated 6 months ago
- ☆135Aug 29, 2024Updated last year
- Genome size estimation from long read overlaps☆89May 1, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆330Mar 12, 2026Updated 2 months ago
- ☆30May 14, 2026Updated last week
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆230Apr 27, 2026Updated 3 weeks ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 8 months ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 4 months ago