☆59Aug 20, 2026Updated last week
Alternatives and similar repositories for peartree
Users that are interested in peartree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Main development repository for SpreadGL☆24Jun 18, 2026Updated 2 months ago
- Repo for PrimerSchemes☆20Jul 6, 2026Updated last month
- Primalscheme3. Generation of highly multiplex primerschemes☆27Dec 4, 2025Updated 8 months ago
- Inferring global and local strict molecular clocks using root-to-tip regression☆20Jun 30, 2026Updated 2 months ago
- Rapid & standardized genome annotation using protein structural information☆75Jul 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Updated this week
- Precise host read removal☆129Apr 13, 2026Updated 4 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- IQ-TREE version 3: software for phylogenetics☆155Updated this week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆39Apr 26, 2026Updated 4 months ago
- ☆22Jul 25, 2026Updated last month
- Fast DNA search and [host] depletion using minimizers☆125Updated this week
- Simple Manipulation Of Trees☆14Aug 16, 2025Updated last year
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆23Jul 22, 2026Updated last month
- ☆16Apr 11, 2026Updated 4 months ago
- Quality control for phylogenetic analyses☆13Aug 17, 2026Updated last week
- Efficient phylogenetic tree inference for massive taxonomic datasets☆147Apr 6, 2025Updated last year
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated last year
- Inference of putative transmission phylogenetic clusters☆12Oct 13, 2020Updated 5 years ago
- ☆24Feb 2, 2026Updated 6 months ago
- A tool for exploring large trees in the browser☆133Jul 27, 2026Updated last month
- Basecalling configuration prediction through FASTQ files☆34Mar 17, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Simple-to-use interactive comparison of two bacterial genomes☆28Jan 30, 2026Updated 7 months ago
- Greening lab hydrogenase database☆19Jun 26, 2025Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆43Updated this week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆35Dec 4, 2025Updated 8 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- ☆14Oct 29, 2024Updated last year
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Create, modify and analyse phylogenetic trees in R☆24Aug 20, 2026Updated last week
- ☆11Jun 29, 2023Updated 3 years ago
- A Python package to update the MLST database for the mlst tool.☆31Jul 22, 2026Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆47Aug 20, 2025Updated last year
- Inference of Ortholog Groups using Hidden Markov Models☆39Updated this week
- Python tool to reduce size and redundancy of phylogenetic datasets☆56Dec 5, 2025Updated 8 months ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Jun 1, 2026Updated 2 months ago