iprada / Circle-MapLinks
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
☆64Updated last year
Alternatives and similar repositories for Circle-Map
Users that are interested in Circle-Map are comparing it to the libraries listed below
Sorting:
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 2 weeks ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- ☆58Updated 2 weeks ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- release version☆54Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- ☆62Updated last year
- ☆50Updated 6 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆44Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆110Updated 4 months ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 4 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- Estimate locus specific human LINE-1 expression.☆36Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆87Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 5 months ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆23Updated last year
- Quantification of transposable element expression using RNA-seq☆72Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago