iprada / Circle-Map
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
☆61Updated 6 months ago
Alternatives and similar repositories for Circle-Map:
Users that are interested in Circle-Map are comparing it to the libraries listed below
- ☆54Updated 3 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆58Updated 6 months ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- release version☆51Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- Tutorial Website☆56Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆51Updated 6 years ago
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆24Updated last week
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆55Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- A list of alternative splicing analysis resources☆41Updated 3 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆36Updated 2 weeks ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆82Updated last week
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆28Updated 2 weeks ago
- FEELnc : FlExible Extraction of LncRNA☆85Updated 5 months ago
- ☆40Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆41Updated last week
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆103Updated 3 weeks ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆40Updated 11 months ago
- HiC uniform processing pipeline☆58Updated last year