shenwei356 / memusg
A 'time'-like utility for Unix that measures peak memory usage
☆18Updated 9 months ago
Alternatives and similar repositories for memusg:
Users that are interested in memusg are comparing it to the libraries listed below
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 5 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Generate unique KMERs for every contig in a FASTA file☆47Updated 2 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆61Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- A versatile toolkit for k-mers with taxonomic information☆77Updated 7 months ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 2 months ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- genomic alignment similarity search tool☆18Updated 9 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆61Updated last month
- A battery of methylation tools for PacBio HiFi reads☆31Updated 2 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- ☆42Updated 10 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- PERF is an Exhaustive Repeat Finder☆32Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆33Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated 2 months ago