shenwei356 / memusgLinks
A 'time'-like utility for Unix that measures peak memory usage
☆18Updated last year
Alternatives and similar repositories for memusg
Users that are interested in memusg are comparing it to the libraries listed below
Sorting:
- A versatile toolkit for k-mers with taxonomic information☆80Updated this week
- Filter SAM file for soft and hard clipped alignments☆53Updated last year
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 2 months ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆62Updated last month
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- UCSC Nanopore☆43Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Updated 3 years ago
- Genome comparison via de Bruijn graph. To get the latest stable version, please visit our site.☆69Updated 4 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- parallelized blat with multi-threads support☆53Updated 7 months ago
- WDL workflows for variant calling and assembly using ONT☆35Updated this week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆62Updated 11 months ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- Detect novel (and reference) STR expansions from short-read data☆67Updated 2 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago