chrisamiller / readDepthLinks
R package for inferring copy number from read depth
☆32Updated 2 years ago
Alternatives and similar repositories for readDepth
Users that are interested in readDepth are comparing it to the libraries listed below
Sorting:
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 10 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Relevant papers for CNV and SV approaches☆94Updated 8 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- ☆69Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- ☆78Updated 11 years ago
- ☆46Updated 5 years ago
- ☆39Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- ⛏ HLA predictions from NGS shotgun data☆53Updated last month
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆71Updated 2 weeks ago
- Tools for analyzing DNA methylation data☆42Updated last week
- ☆53Updated 2 years ago