The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read data of amplified circular DNA.
☆20Apr 15, 2024Updated last year
Alternatives and similar repositories for ECCsplorer
Users that are interested in ECCsplorer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a tool to detect eccDNA using Illumina and ONT sequencing☆16Apr 20, 2024Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Jul 17, 2024Updated last year
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 7 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Jun 3, 2025Updated 9 months ago
- ☆14Oct 14, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- Micro DNA identification☆23Aug 5, 2021Updated 4 years ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆45Jul 3, 2025Updated 8 months ago
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆10Apr 28, 2025Updated 11 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆23Jun 14, 2024Updated last year
- ☆13Mar 1, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- ☆14Oct 17, 2024Updated last year
- ☆18Jul 15, 2025Updated 8 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆14Mar 20, 2026Updated last week
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Jun 21, 2024Updated last year
- ☆10Mar 11, 2026Updated 2 weeks ago
- ☆16Nov 11, 2022Updated 3 years ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Biomark Fluidigm qPCR data set: processing and analysis☆11Apr 8, 2024Updated last year
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆115Feb 12, 2026Updated last month
- Scripts☆10Jun 29, 2016Updated 9 years ago
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆17Jan 4, 2021Updated 5 years ago
- ☆15Dec 11, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- Python implementation of Striped Smith-Waterman Algorithm☆24Mar 4, 2024Updated 2 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- ☆19Jul 28, 2025Updated 8 months ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago