crimBubble / ECCsplorerLinks
The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read data of amplified circular DNA.
☆20Updated last year
Alternatives and similar repositories for ECCsplorer
Users that are interested in ECCsplorer are comparing it to the libraries listed below
Sorting:
- Reconstruction of focal amplifications with long reads☆23Updated last week
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 weeks ago
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- ☆24Updated 6 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 4 months ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆48Updated last week
- ☆51Updated 6 years ago
- Structural variant merging tool☆55Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- for visual evaluation of read support for structural variation☆55Updated last year
- Human reference genome analysis sets☆55Updated 2 years ago
- ☆53Updated 2 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆70Updated last week
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Somatic structural variant caller for long-read data☆80Updated last month
- Long Reads Annotation pipeline☆72Updated 3 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 7 months ago